Niabella insulamsoli: ABDK00_001980
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Entry
ABDK00_001980 CDS
T11434
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nij Niabella insulamsoli
Pathway
nij03410
Base excision repair
nij03430
Mismatch repair
nij03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nij00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
ABDK00_001980 (recJ)
03430 Mismatch repair
ABDK00_001980 (recJ)
03440 Homologous recombination
ABDK00_001980 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nij03400
]
ABDK00_001980 (recJ)
DNA repair and recombination proteins [BR:
nij03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
ABDK00_001980 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
ABDK00_001980 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABDK00_001980 (recJ)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XTN41797
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Position
complement(467491..469191)
Genome browser
AA seq
566 aa
AA seq
DB search
MNKRWNIIQTDSQKVEALQEALHINPTLCKILVQRGLYSFDDAKNFFRPQLTQLHSPWLM
KDMHKAVDRIGLAFQKKEKILVFGDYDVDGTTAVASMYSFLKKQHAYIGVYIPNRYKEGY
GISKAGIDFAKENNYTLIIALDCGIKSVELIAYATTLDIDVIICDHHLPDEHLPQAAAVL
NAKQTDCTYPFKELCGCGVGFKLMCALCEKFDIPIENAYEYLDLVATAIAADIVPISGEN
RILAFYGLKKANENPNLGIKALATLSGARLPIHIHNLVFLIAPRVNAAGRMDDALKAVQL
FIAETEAEAMMFAEQLHSDNSDRKEADSSITAEALALIAENTHWSDYRSTVVYQPHWHKG
VVGIVASRIIEHHYKPTVVLTESGAYATGSARSVPGFNLYEAIHSCREYLINYGGHFAAA
GLTLEKENVEKFRLKFEEVVSATIREELLTPEIIIDAEISFKEITPSFYNILCQMEPFGP
ENMTPIFVARGVTDTGFSKIVKENHLRLVVRQGDQTLTGIGFNLAHKFDLVATKKPFDLV
FKIEQNEWNGQKSLQLKIEDIKESQH
NT seq
1701 nt
NT seq
+upstream
nt +downstream
nt
gtgaataagcgatggaatattatacaaactgattctcaaaaagtagaggctttacaggaa
gcgcttcacatcaaccctactctttgtaaaatcctcgttcaacgcggcctttactctttt
gacgatgccaaaaattttttccggccccaactgacgcagcttcacagtccctggctgatg
aaagatatgcataaggccgtagatcgcattggtctcgcttttcaaaaaaaggaaaaaata
ctggttttcggggattacgacgtagacggcactactgccgtagccagcatgtatagcttt
ctgaaaaagcaacacgcatatatcggcgtgtacattcccaaccggtacaaagaaggctat
ggcatcagcaaggccggaatagatttcgcaaaagaaaataattatacactgattattgcg
cttgattgcggtatcaaatctgtcgagctgatcgcttatgccaccacactcgatattgac
gtaatcatttgcgatcatcatttgccggacgagcacctcccgcaagccgctgcggtatta
aacgccaagcaaaccgactgtacttatccttttaaggaattgtgcggctgtggcgtcggg
tttaaactaatgtgcgcgctttgcgaaaagttcgatattccgatcgaaaacgcctacgaa
tatctcgacttggtggcgacggcgatcgccgccgatattgtgcccatcagcggagaaaac
agaatcctcgctttttatggcctcaaaaaagccaacgaaaatccgaacctgggtattaaa
gcgctggctacgcttagcggcgctaggcttccgatccacatccataatctggtttttctt
attgcgccacgagtgaacgccgccggccgcatggatgacgcattgaaggccgtgcagctt
tttattgcggagacggaagccgaggcaatgatgtttgcagaacaattacatagcgacaac
agcgatcgcaaagaagccgattcttcgattaccgccgaagcgctggcgctgattgcggaa
aatacacattggtctgactatcggtcgacggtcgtctatcagccacactggcacaaagga
gtggtgggaattgttgcctcaagaattatcgaacatcattataagcccaccgtggtcttg
actgaaagcggagcttacgctacgggtagcgccagaagtgttccggggtttaacttgtac
gaagccattcattcctgcagggaatacctgatcaactacggcggccattttgccgcggcc
gggttgacccttgaaaaggaaaatgtcgaaaaattcagattaaagttcgaggaagttgtc
tcggccacgatcagggaagagttgctgacgccagaaattatcattgacgctgaaatttct
tttaaagagattaccccatctttttataatattttatgccagatggaaccgttcgggccg
gaaaacatgacgcccatctttgttgcgcgcggcgttacagataccggcttcagtaaaatc
gtgaaagaaaaccacctgcgcctcgttgtcaggcagggcgaccagacgctaacaggcatt
ggctttaacctcgctcacaaattcgatttggtcgcaacaaaaaagcctttcgacctggtg
tttaaaatcgaacaaaacgaatggaacggccaaaaaagcctgcagttaaaaatagaagat
attaaagaatcgcaacactaa
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