Nitrincola iocasae: F5I99_00020
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Entry
F5I99_00020 CDS
T06212
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
nik
Nitrincola iocasae
Brite
KEGG Orthology (KO) [BR:
nik00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nik03032
]
F5I99_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
nik03400
]
F5I99_00020 (gyrB)
Enzymes [BR:
nik01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
F5I99_00020 (gyrB)
DNA replication proteins [BR:
nik03032
]
Prokaryotic type
DNA Topoisomerases
F5I99_00020 (gyrB)
DNA repair and recombination proteins [BR:
nik03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
F5I99_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
TcaA_2nd
UFD1_N2
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
QEW05012
UniProt:
A0A5J6L9R8
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Position
3838..6261
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AA seq
807 aa
AA seq
DB search
MSGENHSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFELVDNGIDEALAGYCS
EVAVTIHPDESVTVFDNGRGVPTDIHEEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHG
VGVSVVNALSSELTLTIRRDGKVHEQVYRHGVPVAPLKVVGETDSTGTIVRFKPSEDTFT
NIHFHFDLLAKRLRELSFLNSGVRIRLKDERAGREEVFEYEGGLASFVAYLNQSKTTVNS
IFHFNAMHENGVGVEVAMQWNDSYQESIHCFANNIPQRDGGTHLSGFRASLTRCLNNYID
NEQLNKNGKVATTGDDSREGLNAIISVKVPDPKFSSQTKDKLVSSEVKLAVEQMMAQNLS
DYLLENPQDAKAIVSKMIDAARAREAARKAREMTRRKGALDVAGLPGKLADCQEKDPALS
EIYLVEGDSAGGSAKQGRDRRTQAILPLKGKILNVEKARFDKMLTSAEVGTLITALGCGI
GRDEFNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPELIERGHVYIAQPPLYKVR
KGKQEQYLKDEAALEQYLLQGALDGTQLFPTADAPPISGAALEKLISRYRHVESLIDRIS
RVYPRSVLGQLMYLKKLDVDSLYNKEAVSTWVEQLSVYLSDHVSSSSSWYSCSVAEDREH
SQFIPVVMFTQHGNDITYRFDQEFFRSRDYQSIAELGEELQGLLEEGAYLQRGERVYPLR
NLGDGITWLLDISRRGNNVQRYKGLGEMNPDQLWETTMDPDARRMLQVTIDDVIGADKLF
STLMGDDVEPRRAFIELNALNVSNLDV
NT seq
2424 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtgaaaaccatagttatgattcatcgagtatcaaagttctgaaaggactcgat
gccgtcagaaaacgtcctggtatgtacataggcgataccgatgatggcagtggtctgcat
catatggtatttgaacttgtagataacggtattgacgaagcgctggcgggttattgctca
gaagttgcggttactattcatcctgatgaaagcgtcacggtatttgataacggtcgtggt
gtgccaaccgatattcatgaagaggaaggcgtctcggcggctgaagtcatcatgactgta
ttacatgctggtggtaagttcgacgataacacttacaaggtttcgggtggcttgcatggt
gtgggtgtgtcggttgttaatgccctttccagtgagctgactctgactatccgtcgtgac
ggtaaggtgcatgagcaggtttaccgtcatggtgttccggttgctccgctgaaagttgtg
ggtgaaaccgactcgaccggcactatcgttcgattcaaaccttcagaagatactttcacc
aatattcattttcattttgacctgctggccaagcgcttgcgtgaactctctttccttaac
tcaggtgtgcgtatccgtcttaaggatgagcgtgctggtcgtgaagaggtgttcgagtat
gaaggaggtctggcttcatttgttgcctacttgaaccagagtaaaaccactgttaactcc
atttttcactttaatgccatgcatgagaatggtgtgggtgttgaagttgccatgcagtgg
aacgacagctatcaggaaagcattcactgtttcgccaataatattccacagcgtgacggc
ggtacgcacctttcaggttttcgcgcctccctgactcgctgtctgaataactacatagat
aatgaacagctgaataaaaatggtaaggtcgctaccactggggatgattcccgtgagggg
ctaaacgctattatttctgtcaaagtgcctgatcctaagttctcttctcagaccaaagac
aaattagtctcatctgaagtgaagttggctgttgagcaaatgatggctcaaaacctgtcg
gactatctgctcgagaatccgcaggatgccaaagcgattgtctccaaaatgattgatgcg
gcccgtgcgcgtgaagccgcgcgtaaagcacgtgagatgactcgtcgtaaaggggcgctg
gatgttgcaggcttgccaggcaagttggctgactgtcaggaaaaagatccggcgctgtca
gaaatctacctggtggagggtgattcggccggtggttctgccaagcagggacgtgatcgt
cgtacccaggctattttaccgctcaagggtaagattcttaatgttgaaaaagcccgtttt
gataagatgctcacctcggctgaggttggtaccctgattacggccttgggttgcggtatt
ggtcgggatgaattcaatccggataaattgcgttatcactccattattatcatgaccgat
gccgatgtggatggctcgcacatccgtactctgctactgaccttcttctaccgtcagatg
cctgagttgattgagcgtggccatgtgtatattgctcagccgccgctgtacaaagtgcgt
aaaggtaagcaagagcaatatcttaaagatgaagctgccctggagcagtacttgctacag
ggtgcgttggacggtacgcaattgtttccaacggctgatgcaccgccaatttcaggtgcg
gcgctagaaaagctgatctcacgctatcgtcatgttgaatcattgattgaccgaattagc
cgtgtatacccacgctctgttttgggtcagttgatgtatctgaaaaaactggacgttgat
tcgctttataataaagaagcggtttctacctgggttgagcagttatccgtctacctttca
gatcatgtgagttcttcctcatcctggtacagctgttcagtagccgaagatcgtgaacac
agtcagtttatcccggtagtgatgttcacccagcacggcaatgatattacctatcgcttt
gatcaggagttcttccgttcacgtgattatcaatccattgctgagctgggtgaggagtta
cagggtttgctggaagaaggtgcttaccttcagcgcggagagcgcgtctaccccttgcgt
aatctgggggatggtattacctggttgctggatatttcccgtcgtggtaataatgtacag
cgctacaaaggtctgggtgaaatgaacccggatcagctatgggaaactaccatggaccct
gacgcccgccgtatgcttcaagttaccatcgatgatgtgattggcgctgacaaactcttc
tctaccctgatgggcgatgatgtcgaaccgcgtcgtgcattcatcgaactgaatgcgttg
aatgtttctaaccttgatgtttga
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