Nitrincola iocasae: F5I99_06400
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Entry
F5I99_06400 CDS
T06212
Symbol
phrB
Name
(GenBank) deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
nik
Nitrincola iocasae
Brite
KEGG Orthology (KO) [BR:
nik00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nik03400
]
F5I99_06400 (phrB)
Enzymes [BR:
nik01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
F5I99_06400 (phrB)
DNA repair and recombination proteins [BR:
nik03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
F5I99_06400 (phrB)
Prokaryotic type
F5I99_06400 (phrB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
QEW08515
UniProt:
A0A5J6LIW2
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All DBs
Position
1392253..1393656
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AA seq
467 aa
AA seq
DB search
MKLVWLRNDLRRLDNPALFYACDTQAGVTAVVTLTPQQWQLHSEAPARLALWRDQLIALK
ADLAELNIGLRVLQLNRFDQVPVALQQLATELKADTVYFNYEYPLNERQRDRQVCAELEA
AGVRCLGYHGELIIPPGQVVTGQGGMFKVFTPFSRAWRQQYLQQLPEPLGMPACQPELTP
SDRLPDDLGFKALAAALMPYDSQRWPVGETAVHARLNDFIECAVTDYASQRDFPAVDGTS
RLSPYLSIGALSPLQCLQCLKVESGSDAWLDSIWMNELIWREFYRHLLVAWPNMSRLEPF
RPEVEQRISWQHQPALFDAWCRGETGYPIVDAAMKQLLTTGWMHNRLRMVVASFLTKLLR
VDWRLGADFFMAHLIDADFASNLGGWQWAASVGADAAPYFRIFNPQIQSEKFDPDGDFLL
HWLPELTDVPRRQRHLPGAGQAMGRPAPIIEYKSARQSALDDYQQRS
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaaactggtttggttacgtaacgatctgcgccggctggataatccggcgcttttttat
gcctgtgacacacaagcgggtgtgacggctgtggtaacgctaacgccgcaacagtggcag
ttacacagtgaggcacctgcaaggctggcactttggcgggaccagcttatagctttaaaa
gctgaccttgctgagctgaacattggtttgcgggtattacaactcaaccgctttgaccaa
gtacccgtcgcgttgcaacagctggccactgaattaaaggcggatactgtctattttaac
tatgaatacccgctcaatgaacgtcagcgtgatcgacaggtatgtgctgaactggaagcg
gctggtgtacgctgcctgggttatcatggcgaactgattattccccctggacaggtcgtg
accgggcagggcgggatgttcaaagtcttcacgcctttcagtcgcgcctggcggcagcaa
tacctgcaacagctgcctgagcccttgggcatgcctgcgtgtcagccagaattgactcct
tcggatcgccttccggatgacttaggctttaaagcccttgcggcagcattgatgccctat
gactctcagcgttggccagtcggtgaaacggctgtgcatgccaggctgaatgattttatt
gagtgtgctgttactgactatgccagtcagcgggattttcccgctgtggatggcacatca
cgtttgtccccctatttatccattggtgcgctgtctcccttacaatgcctgcagtgcctt
aaggttgagtctggtagtgatgcctggctggatagtatctggatgaacgagttgatttgg
cgggagttttaccgacatttgttggtcgcctggccaaacatgagtcgcttggaacccttc
aggcccgaagtggagcaacgtattagttggcagcaccaacccgccttatttgacgcctgg
tgtcgtggtgaaaccggttatcccattgtcgatgcggcgatgaaacagctactcaccacc
ggctggatgcacaatcgtttgcgtatggtggtggcctcattcctgaccaaattgttacgt
gtcgactggcgtttgggtgctgatttttttatggcacacctgatcgatgctgacttcgcc
tctaatctgggtggttggcaatgggcggcatcggtaggtgctgatgccgctccctatttt
cgtatattcaatccccagattcagagtgaaaaatttgatccagatggagatttcttgctg
cactggttacctgaattaaccgatgtaccacgccgacaacgtcatctccccggagctggt
caggcgatggggcgtccggcaccgatcattgagtataaatcggcccggcagtccgcattg
gatgactatcaacagcgctcctag
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