Nitrincola iocasae: F5I99_08215
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Entry
F5I99_08215 CDS
T06212
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
nik
Nitrincola iocasae
Pathway
nik03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
F5I99_08215 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nik03400
]
F5I99_08215 (recC)
Enzymes [BR:
nik01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
F5I99_08215 (recC)
DNA repair and recombination proteins [BR:
nik03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
F5I99_08215 (recC)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
QEW06494
UniProt:
A0A5J6LCT3
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All DBs
Position
1775808..1779359
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AA seq
1183 aa
AA seq
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MGAIERVPNIKTKLADPLIPGFMVIQGNHLEELRHLMVSWTQHYPLKPLENEVILVQSNG
IAQWLKLALAANSGDGAESGLGIAAGLQVMLPGRFIWQAYRQEFPQLPSASPFDKAPLTW
RLLRLLSDLPALAARAPDPQVLQPLQHFLDQDPSVSRTWQLAARLADLYDQYQVYRADWL
EAWLQGESVLITAAGERQPLKAEQAWQPLLWQWLNADIRQAHSEADFLSYASRSSVHQVF
CQQLGEADANQPPTGFPRRIIVFGISSLPRQTLEVLEVLSQFSQVMLFVCNPSQHYWGDL
IEGRELFKKAYQRNSERRVPDNLDEDQLHLHGHPLLAAWGRQGRDYLRLLDERDQPQSYQ
QHFERIDLFSSPGNETLLQQLQDDILELRTLSERQAMQIQVDVQDRSLSFMLAHSPQREV
EILQDQLLAEFEAAQHSGEPLNPRDILVMVPDIQVYAAHIDAVFGKLDRDDPRYLPFHIA
DQGQRHKAPLLIALESLLHLPESRFSVTELLDLLDVPALRACFELDEVDLLSLKRWIQGA
NIRWGLDAEQREALDLPEGVSANTWRFGLKRMLLGYASGETSAWQGTVPYAEVAGLEAAR
LGPLVLLLDQLETAWHTLQQATHAGEWAARLQQLLQDFFVPQSELDQALLLKFEQQLTQW
LEAIELAEASDLPLTLDVVREELLSGLDQPGLSQTFLAGSVNFATLMPMRAIPFRQVWLL
GMNDGAYPRAVRPVDFDLMAQDYRPGDRSRREDDRYLFLEALLAAREKLVVSWVGRSARD
NSVRPPSVLVGQLRDHLQSGWQGQTDDLLNELTIEHPLQPFSRRYFDQDAAAHAPFSYAS
EWLAVHQPISQAQSPLSLEPWQPETALSLSQLVQLMKQPIDSFYALRLQVPRTESIQVLR
DTESFALDGLEVWQLRDRLLQSAILPAVDEDDFLQRVGDEVQRIQQEGLLVEGSLGQLQG
QQLCQGLDAVYSDWLAERTEFSDALESQPVMYSAHSEWGVLSVEAMLEPLYQNPETGEVA
LLLLQSSGLIKQGRTRKWHNHLRGWLMHLLAHQSGLKLTTWIMTPEGKIRFAPLASAEQA
RACLDRLLQAAHATLQAPTPLSLDTAIAWLANRDDAAVPEFPEGKLQTKLLEALDKSLQQ
SRFFHQHCTGLEQLWAEGAFVQHAQALYGDFHQAVTAQKETRS
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgggggcgatagaaagagtgccgaatataaaaaccaagctggctgaccccttgattcca
gggtttatggtgattcaggggaatcatcttgaagagctgcgtcatttgatggtgagctgg
actcagcattacccgcttaagccgttggaaaatgaagtgattctggtgcaaagcaacggt
attgcgcagtggctgaaactggcactggcggcgaactcgggggatggagcggaatccggg
ctgggtattgcggcggggttgcaggtgatgctgccggggcggtttatctggcaggcttat
cgtcaggagtttccccagctacccagtgcttccccctttgataaagcccccctgacctgg
cggctgctgcgattgctcagtgatctgccagccctggctgccagagcgcctgatcctcag
gtgctacagccgctgcaacattttctcgatcaggacccctccgtgtcacgaacttggcag
ttggcggcgcgcctggcggatctttatgatcaatatcaggtctaccgggccgattggctg
gaggcctggctgcagggtgaatcggtgttgatcaccgcagcgggtgaacggcagccattg
aaggcggagcaggcctggcagccgttgctctggcagtggctgaatgcggatattcgtcag
gctcactcggaggctgattttctcagttatgccagccgttccagcgtgcatcaggtgttt
tgtcagcagcttggcgaggcagatgctaaccaaccaccgactggctttccacgccgaatc
atcgtgttcggtatctcctccttaccccggcaaacactggaagtgctcgaagtgctgtcg
cagttttcccaggtgatgctgtttgtgtgtaatcccagtcagcactattggggcgatctg
atcgaagggcgggagctgttcaaaaaggcttatcagcgcaattctgaacgccgcgtgccg
gataatctggatgaagatcaactgcatctgcacggccatcccttactggcagcctggggg
cgtcagggacgtgactatctgaggctgctggatgagcgtgatcagccgcagagctatcag
cagcactttgaacgcatagatctgttttcatcgccagggaacgaaacactgctgcaacaa
ctgcaggatgatattctggaactgcgcaccctgagtgagcgccaggcgatgcagatccag
gtggatgtgcaagatcgcagcctgagctttatgctagcacatagtccgcagcgtgaggtg
gagatccttcaggatcaactattagccgagtttgaggcggcgcaacactcaggtgaaccc
ttgaacccccgcgatattctggtgatggtgccggatatccaggtgtatgccgcacatatc
gatgctgtgttcggtaaactggatcgagatgatccgcgttatctgccatttcatattgcc
gatcagggccaacgccacaaagcgcccttgctgattgcactggaaagtctgctgcatctg
cctgagtcccgcttcagtgtcaccgaactgctggatctgctggatgtacccgctttgcgc
gcctgttttgaactggatgaggtcgatctgctcagcctgaagcgctggatacagggagcc
aatattcgctggggactggatgctgagcagcgtgaagcgctggacctgcctgaaggggta
tcggctaatacctggcgttttggcttgaagcgaatgctgctgggctatgccagtggtgaa
acgtctgcctggcagggaaccgtaccctatgctgaagtggctggcctcgaagctgccagg
ttaggaccgctggtgctgttgctggatcaactggaaactgcctggcacacgctgcagcaa
gctacccatgctggtgaatgggctgcccgtttgcagcagttgttgcaggatttctttgtg
ccccagtcagagctggatcaggcgttgctgctcaagtttgagcagcagttaacacagtgg
ctagaggctatcgagttggctgaagccagtgatctacccttaacactcgacgtggtgcgt
gaagagctgctgtccggtctggatcagccgggtttgagtcagacattcctggccgggtcg
gtaaactttgctacgctgatgccgatgcgtgccattccgtttcggcaagtctggttgctg
gggatgaatgatggtgcttatccgcgcgctgtcagaccggtggattttgatctgatggca
caggactatcgacccggtgaccgttcccgacgagaagatgatcgctatctgtttctggaa
gccttgctggccgcgcgcgagaagctggtggtcagctgggtgggccgcagtgcccgcgat
aactccgtgcgaccaccgtctgtactggtcgggcaactgcgtgatcacctgcagtcgggt
tggcaaggacagaccgacgatctgctcaatgaactgaccatcgagcacccgttacagcct
ttcagtcgccgctattttgatcaggacgccgctgcgcacgcgccgttcagttatgcctcc
gagtggttagcggtacatcagccgatcagccaggcgcaatcaccgctatcgctggagccc
tggcagccggaaaccgccttgtctctgtcacagttggtgcagttgatgaagcagccgatc
gacagcttttacgccctgcgtctgcaagtgccgcgaacggaatctattcaggtgttacgc
gataccgaaagctttgcgctggatgggttggaagtttggcaactgcgtgaccggctgctg
caatccgccatcctgcctgccgtggatgaagatgactttttgcagcgcgtcggtgatgaa
gtacagcgtattcagcaggagggcttgctggttgaaggcagtctcggtcagttgcagggg
cagcagttgtgtcagggactggatgcggtctatagcgactggttggccgaacgcactgag
ttcagtgacgcgctggagagccagccagtgatgtattcagcgcatagcgaatggggtgtg
ttgtctgtagaagccatgcttgagcccctgtatcagaaccctgaaacaggggaggtcgcg
ttgctgttgttgcaaagcagtggcttgatcaaacagggtcggacgcgcaaatggcacaat
cacttgcgcggctggctgatgcacctgctggctcaccagagcggcctgaaactgaccacc
tggattatgacccctgaaggcaaaattcgctttgcaccactggcgtctgcggagcaggcc
cgtgcctgtctggatcgtctgctacaagctgcacatgcaacactgcaggcgcccacgcct
ttaagcctggatactgccatcgcctggctggccaaccgggatgacgcggctgtacctgag
tttccagagggtaagctccagaccaaactgctggaggcgctggataagagccttcagcaa
agccgtttctttcatcagcactgtactggtcttgaacagctttgggccgaaggtgcattt
gtccagcatgcacaggcgctctacggtgactttcatcaggctgtaacagcgcagaaggaa
acccgctcatga
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