Nitrincola iocasae: F5I99_08225
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Entry
F5I99_08225 CDS
T06212
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
nik
Nitrincola iocasae
Pathway
nik03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
F5I99_08225 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nik03400
]
F5I99_08225 (recD)
Enzymes [BR:
nik01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
F5I99_08225 (recD)
DNA repair and recombination proteins [BR:
nik03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
F5I99_08225 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
RecD_N
AAA_11
Viral_helicase1
UvrD_C_2
AAA_22
Helicase_RecD
SH3_13
UvrD-helicase
PhoH
AAA_16
SLFN-g3_helicase
T2SSE
nSTAND3
AAA_28
NTPase_1
Mg_chelatase
SlyX
Motif
Other DBs
NCBI-ProteinID:
QEW06496
UniProt:
A0A5J6LDR4
LinkDB
All DBs
Position
1783057..1785084
Genome browser
AA seq
675 aa
AA seq
DB search
MKADSEASLNWLNLLHQQGKLRALDLALSRYIAEAAPESDPCVLLAIALTSERNGHGDVC
LDLIGALTHLELAAGPDAPALASILQMLQSVSPESWWARLSQSAAIQRLASDGQSDQPEK
ATAPLVLSGSSERPILYLRRYWNYEQQVRTALMQRIDHCYDLPEAPMAALLNSLFPPSAE
TAQPDWQKIACALSARRGFAVITGGPGTGKTTTVVRLLALLQALALQQAQPVLRIALAAP
TGKAAARLNASIAAQVANLPLAALSKTPEQLEAAIPTEVTTLHRLLGPIPDSRRFRHHRS
QQLPVDLVVVDEASMVDLEMLAALVDALKPGARLILLGDKDQLASVEAGAILGDLCQQAS
LGRYQDETAQWLAGVTGYSLDARYLSETGRPLDQVITMLRQSHRFSEQGGIGALARLVND
GQLYDQPVEDRLQALDQLFTEQQDQIDRLSVSHASDASLAQLIIKGYQTYLQQLQQSRPA
LAAGLAAHDLWAAQVLETHTGFQLLCAVREGPWGVEQLNQWITRTLAGAGLLEGSDALWY
EGRPVLITRNDYSLRLMNGDIGIALMRPVENSDGSITSALRVVFPAVDGSVRWVMPSRLQ
ALESVFAMTVHKSQGSEFSHTALVLPDQPNPVLTQELIYTGITRSRERFTLIHSRDSVLR
HALEKRVTRLSGLHL
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcggatagcgaagcgtcattgaactggctgaatctgttacatcagcaaggaaag
ctccgtgcactggatctggcattgagtcgttatatagccgaggccgcgcctgagtcagat
ccctgtgtgttgctggcgattgccctgaccagcgagcgcaacggtcatggtgatgtatgt
ctggatctgatcggtgccctgacccatctggagttagccgctggacccgatgcgccggca
ttggccagtatcctgcagatgcttcagtcggtgagtccggagagttggtgggcgcgtttg
agtcagtctgcggcaattcagcggcttgcatcggatggacagagtgaccagccggaaaaa
gccacggcgcccctggtgttatccggatcatcggagcgcccgatactctacctgcgccgt
tactggaactatgaacaacaggttcgcactgcgctgatgcagcgcatcgatcactgttat
gacttaccggaagcgccgatggcggccttgttgaacagcttgtttccaccatcggctgaa
acagcgcagccggattggcagaaaattgcctgtgccttgtcagcacggcgtggctttgcc
gtgattaccggtggtcccggaaccgggaaaaccactacggtggtcaggctactggcgctg
ttgcaggccctggcgcttcagcaggcgcaacccgtattgcgcatagccctggctgcaccg
acgggtaaggccgcggcacgcctgaatgcgtcgatagcggctcaggtagctaatttgccc
ttggctgctttgagtaaaacacccgagcagctggaagccgcgattccgactgaagtgacc
acactgcaccggctgttagggccgataccggacagccgtcgctttcgtcatcaccgcagc
cagcagttgccggtcgatctggtggtggttgatgaagcctccatggttgatctggagatg
ctggccgcgctggtcgatgccctcaaacccggcgcacgtttgattctgctgggagacaag
gaccagttggcctcggttgaagccggtgccatcctcggtgatttgtgtcagcaggcatca
ctgggccgctatcaggatgaaaccgcgcaatggttggcaggcgtcaccgggtattcactc
gatgcgcgctatcttagtgagaccgggcgaccactggatcaggtgattaccatgttgcgc
cagagccatcgcttcagtgaacagggcggcataggcgccctggcacgtctggtcaatgat
ggacagctctatgaccagccagttgaagatcgtctgcaggcgttggatcaactctttacc
gaacagcaggatcagatagatagactcagcgtcagtcatgcctcagatgcatccctggct
cagttgattattaagggctatcaaacctatctgcaacagcttcaacaaagtcgaccggct
ttggcggccgggctggcagcccatgacctttgggctgctcaggtacttgaaactcatact
ggctttcagttgttgtgcgcggtgcgcgaaggcccctggggtgttgagcagttgaatcaa
tggatcactcgcacgctggccggggccggattactggaaggcagtgatgcactctggtac
gaagggcgaccggtgctgattacccgcaacgattacagcttgcgtctgatgaacggggat
atcggcattgccttaatgcgccctgtagaaaattccgacggttcgatcacctccgcattg
cgggtggttttccccgccgtcgatgggagcgtacgctgggtcatgccaagtcgtttacag
gcgttggaaagcgtgtttgccatgaccgtacacaaatcccagggctccgaattcagccac
accgcgctggtgttaccggaccagcccaaccccgtactcacccaggagctgatctacacc
ggcatcactcgctctcgcgaacgcttcaccctgatccacagccgcgatagcgtactccgg
cacgccctggaaaaacgcgtaacccgcctcagcggcctccacctctaa
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