Nitrincola iocasae: F5I99_08340
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Entry
F5I99_08340 CDS
T06212
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nik
Nitrincola iocasae
Pathway
nik03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nik00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F5I99_08340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nik03019
]
F5I99_08340
03009 Ribosome biogenesis [BR:
nik03009
]
F5I99_08340
Enzymes [BR:
nik01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
F5I99_08340
Messenger RNA biogenesis [BR:
nik03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
F5I99_08340
Ribosome biogenesis [BR:
nik03009
]
Prokaryotic type
rRNA processing factors
F5I99_08340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QEW06518
UniProt:
A0A5J6LDU9
LinkDB
All DBs
Position
complement(1808919..1811903)
Genome browser
AA seq
994 aa
AA seq
DB search
MLINATQSEEVRVALVDGQRLYDLDMESDSREQKKANIYKGRITRVEPSLEAAFVDYGAD
RHGFLPLKEISREYFSKSPERGQRPNIREVVKEGTEVFVQVDKEERGNKGAALTTFISLA
GRYLVLMPNNPRAGGISRRIEGDDRAQLKEALSGVKVPDNMGVIIRTAGIGRSSEELQWD
LDYLTTLWDAILEVNQRRAPFLVYQESGVVIRAIRDYLRADIGEVLIDSPEVYEQALQFV
RQVIPTFESRIKLYKEETPLFNRFQIESQIETAFEREVQLPSGGSIVIDPTEALVSIDIN
SARATRGSDIEETALNTNLEAADEIARQLRLRDIGGLIVIDFIDMTPIKNQREVENRLRD
ALKVDRARVQMGRISRFGLLEMSRQRLRPSLSETRGSVCPRCNGTGVIRDTGSLALSIMR
LIEEESSKDRTAQIRAILPVSVATFLLNEKRAEVHAIERRHDVQVVIVPNPNMETPHYEV
VRLRDDHTIATTENTSFSKPEPQQDADDNSRKPIKREEAAVKTIVPPERKQSVTTEAPAQ
AISTPSSTPATKAPVSSGSSFASRVMSTLKTLFLPSPAKDTAPKQATPQKSAEERSKRSE
PDSRRQSSRQTQQGDKRRRRPKDNDKRRDRSRDERQEEVITIEPEQNLPPIGEKPTQDET
TPRPRRRRRNNDKRRQDKPESSEQTVVETELTTEQPQDATADKQESSADKDRSDADNSRS
RQRGRRRRTGERTAKRTLAVTDTETEAVTSNPQTPEQDTTLSTANISADTAEQVESTDLQ
ESTTEQPITQQASEEQTDSTQVSEAESDVTATTENIEPAVSVETTETQQTTETDESVKES
AAPPVGTDATEEQSTQEADTTETTAITKTEEVAVADKATEADTPTAEVEPTAEVEPTAEV
EPTADVEPTPDVEIAKEVAEPPATETPVSLDTEAAPQSDEVNTESDSKAPETQETEPVTE
AEKPQTRRPSRRAPNDPRLKRQTQPSEEGSDSSS
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcagtcggaagaggtgcgtgttgcgcttgttgatggccaacgc
ctatatgatctggacatggaatctgatagccgtgaacagaagaaagccaacatctataaa
ggtcgcatcacccgggttgaacccagccttgaagccgctttcgtcgattatggcgccgac
cgccatggtttcctgccattaaaagagatctcccgcgaatacttcagtaaatctccggaa
cgcggacaacgtccgaatatccgtgaagtcgtcaaggaaggtactgaagtttttgtgcag
gtcgacaaagaagagcgtggcaataaaggtgcggcattaaccacctttatcagcctggcg
ggtcgttacctggtactgatgccgaacaacccacgggcgggtggtatttcccgccgtatc
gaaggtgatgatcgcgctcagctcaaagaggccctgtccggtgttaaagttcctgacaat
atgggtgtcatcatccgcaccgccggtatcggtcgcagcagtgaagagctgcagtgggac
ctggattacctcaccaccctttgggatgccatcctcgaagttaaccaacgcagagcaccc
ttcctggtataccaggaaagtggcgtagtaatccgcgcgattcgtgactaccttcgcgct
gacattggcgaagtcctgatcgatagcccggaagtctatgaacaggcattgcagtttgtg
cgccaggttatcccgaccttcgaaagccgcattaagctgtataaagaagaaacgccgctg
tttaaccgtttccagatcgaaagtcagatcgaaacggcgtttgagcgcgaagtacaatta
ccttccggtggctctatcgttatagacccgactgaagccctggtatctatcgatatcaac
tcagcccgtgcaacacgcggcagtgatattgaagaaaccgcgctgaacactaatctggaa
gcggcagatgaaattgcccgccagctacgcctgcgcgatatcggcggcctgatcgttatc
gactttatcgatatgaccccgatcaagaaccagcgcgaagtggaaaaccgcttacgtgat
gcgttgaaagtggatcgtgcccgtgtccagatgggtcgtatttcacgtttcggcctgctg
gaaatgtcgcgtcagcgtctacgcccctctctcagcgaaacgcgcggcagtgtttgccca
cgctgtaacggcactggagttattcgcgataccggctcactggctctgtccatcatgcga
ctgatcgaggaagaatcctctaaagatcgcaccgcacagatccgcgcgattctgccagtc
agtgtggctacattcctgctgaatgaaaagcgtgccgaagtccatgcgatagaacgccgc
cacgacgttcaggttgttatcgtacccaatccaaacatggaaacgcctcactatgaagtc
gtgagacttcgcgatgatcatacgattgcgacaactgaaaacaccagcttcagcaagcct
gaaccgcaacaggatgcagatgacaacagccgcaaaccgataaaacgtgaggaagcggca
gttaaaaccatcgtgccacctgagcgcaagcagtctgttaccacagaagctccggcacag
gcgataagcacacctagtagcactccggctacaaaagccccggtcagcagcggcagctct
tttgccagccgcgtgatgtcgacgctgaaaaccctgttcttaccctcccctgcaaaggat
acggcacccaaacaggcgacccctcagaaatccgcagaagagcgcagcaaacgctctgaa
cccgatagtcgccgacagagttcccgccagactcaacagggtgacaagcgtcgtcgtcgt
cctaaagataacgacaaacgccgtgatcgcagtcgtgatgaacgccaggaagaagtcatc
accattgaaccggagcagaatctaccaccgattggtgaaaaaccgactcaggatgaaacc
acgccacgtccgcgtcgtcgccgtcgtaacaacgacaagcgccgccaggataaacctgaa
tcatccgagcaaacagttgttgagacggaactgaccaccgagcagccacaggatgctact
gccgacaagcaggagagcagcgcagataaagaccgttcagacgcagataatagccgcagt
cgtcaacgtgggcgtcgtcgtcgtactggcgagcggaccgctaaacgcacactggctgtt
acagatactgaaactgaggcagtcacatcgaatccacagactccagagcaggatacgaca
ctcagcacagcaaacatctctgccgatacagctgaacaggtagaaagcacggatttgcag
gaatctacgacagaacagcccattactcagcaagcaagcgaagagcagacggactcaact
caggtgagtgaagcagaaagcgatgtaacagccactactgaaaacatcgaacccgctgtt
tctgtagaaactacagaaacacaacagaccactgagactgacgaatctgttaaggaatct
gctgccccccctgttgggactgatgctaccgaggaacaaagcactcaggaagctgacaca
acagaaacaactgcaattactaaaactgaagaagttgcagtagcagataaagccaccgaa
gctgatactccaacagcggaggtcgagccaacagcggaggtcgagccaacagcggaggtc
gagccaacagcggatgtggagccaacacctgacgtagaaattgccaaagaggttgcagag
ccccccgctacagaaacaccagtcagcctggacacagaagccgcacctcagagtgacgag
gtaaatactgagtcagactccaaagcaccggaaacacaggaaacggagccagtaactgaa
gccgaaaagcctcagacacgtcgccccagccgccgagctcccaatgatcctcgcttgaag
cgtcaaactcagccttcagaagaaggcagcgatagtagctcttga
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