Nitrincola iocasae: F5I99_09995
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Entry
F5I99_09995 CDS
T06212
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02667
two-component system, NtrC family, response regulator PilR
Organism
nik
Nitrincola iocasae
Pathway
nik02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
nik00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
F5I99_09995
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02022 Two-component system [BR:
nik02022
]
F5I99_09995
02035 Bacterial motility proteins [BR:
nik02035
]
F5I99_09995
Two-component system [BR:
nik02022
]
NtrC family
PilS-PilR (type 4 fimbriae synthesis)
F5I99_09995
Bacterial motility proteins [BR:
nik02035
]
Pilus system
Twitching motility proteins
F5I99_09995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
AAA_lid_14
Sigma54_activ_2
HTH_8
AAA_5
HTH_30
HTH_28
AAA_16
HTH_1
AAA_19
HTH_24
AAA
Motif
Other DBs
NCBI-ProteinID:
QEW06807
UniProt:
A0A5J6LE68
LinkDB
All DBs
Position
complement(2169738..2171141)
Genome browser
AA seq
467 aa
AA seq
DB search
MKSVSATDRSRVVQPRVLVVDDEPDIRELIRLTLTRMQVDCLEAATLAEALQLLDQQGQG
RIQLCLTDMRLPDGNGMDLIYRIQKYYSHIPVAMITAHGNMSSAIEALKAGAFDFLNKPV
ELQTLRNLVTSAVRLEKQQQIAPGCDPGPELMGQSRAIEKIRALVVRLSRSLAPVHISGE
SGTGKELVARMLHHRSHRCDKPFIAVNCGAIPADLMESEFFGHRKGSFTGATQHKEGLFQ
AAEGGTLFLDEVADLPLDMQVKLLRAIQEKSVRPVGAQKEEFVDVRIVSATHEDLAAKVE
SGEFREDLYYRINVIELRVPPLREHAEDIPYLAAYFLQQLATEMGRSAPRLSAEAQERLC
RHRFPGNVRELENVLARAITLNEGDLIEIEDIQLDNRSQSACDEATAGANGLQKVCSMGL
EAYLELVERQILQEALEATHFNKTAAARKLGITFRTLRYRLKKLEMD
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagtgtaagcgctactgaccggtctcgggttgtacaacccagagtgctggtagtg
gatgatgaaccggatattcgtgagttgatccgactgaccttgacgcgaatgcaggtagat
tgcctggaggcggcgacgctggccgaagcgttacaattgctggatcagcagggacagggg
aggattcaactctgtctgactgatatgcgtctgcccgatggtaacggtatggatctgatc
tatcgcatccaaaaatactactcacacattcctgtcgcgatgattacggcgcatggcaat
atgagtagtgccattgaggcactcaaagccggtgcttttgattttctgaacaagcctgtt
gagttgcagacgttacgtaatctggttacgtctgctgttagattggaaaaacaacagcaa
atcgctcctggatgtgacccaggacctgaattgatggggcagtcacgtgcgattgaaaaa
atacgtgctctggttgtccgcctttcacgcagcctggcccccgtgcatatttcgggcgag
tcgggcacaggtaaagagctggttgctcgtatgttgcaccatcgcagtcaccgttgtgac
aaaccctttattgctgtgaactgtggagctattccggctgatctgatggaaagtgaattt
tttggtcatcgtaaaggtagctttactggtgcaactcaacataaagaggggctgtttcag
gcggcggaggggggaacacttttccttgacgaggtggctgacttacctctggatatgcaa
gtgaagctgctgcgtgctattcaggaaaaatcagtcaggccggttggggcacaaaaagaa
gagtttgttgatgtgcgtattgttagtgcaactcatgaagacttggccgcgaaagtggag
tcaggcgagtttcgtgaagacctctactaccgtatcaatgtgattgagctacgggtgccg
ccactgcgggagcatgccgaggatatcccttatctggctgcgtattttctgcagcagctg
gctacagagatggggcgttcggccccacgtttgtcggccgaggcgcaagaacgcctgtgt
cggcatcgttttcccggtaatgtacgcgagttggaaaatgtgctggcacgtgcgattacc
ctcaatgaaggtgatctgatagaaattgaggatattcagctcgataatcgcagccagtca
gcctgtgacgaggcgacagcaggcgcaaatggattgcaaaaagtgtgtagtatggggctg
gaggcttatctggagctggtcgaaagacagatccttcaggaggccctggaagccactcat
ttcaacaaaacagccgctgcccgaaagctgggtatcacctttcgaaccctgcgctatcgg
cttaaaaagcttgaaatggactag
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