Nitrincola iocasae: F5I99_10300
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Entry
F5I99_10300 CDS
T06212
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
nik
Nitrincola iocasae
Brite
KEGG Orthology (KO) [BR:
nik00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nik03019
]
F5I99_10300 (hrpB)
Enzymes [BR:
nik01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
F5I99_10300 (hrpB)
Messenger RNA biogenesis [BR:
nik03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
F5I99_10300 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
ResIII
Flavi_DEAD
Cas3-like_C_2
Zeta_toxin
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QEW08561
UniProt:
A0A5J6LKW7
LinkDB
All DBs
Position
2234584..2237073
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AA seq
829 aa
AA seq
DB search
MNPLPIDDVLPALRQSLAQPGAVLLSAAPGAGKTTRVPLALLDEPWLNGQRIVMLEPRRI
AARHAAQFMAQQLGESVGQRVGYRIRLDTRVSAQTRIEVVTEGVLTRLLQDDPELSGIGL
VIFDEFHERNLHADLALALTHQCQQLLRPDLRLLIMSATLDEQTLTEALDAPLLVSEGRS
FPVDIHYQPLLNANQSIIEHTARVIRQALQHDGDMLVFLPGVREIKQVQQALSDLPPTTH
ILPLHGQLNDAEQKAALTPAPSGQRKVILTTNIAESSLTVDGVRIVVDSGLERRSVFHLS
SGLNTLTTRQISRASATQRCGRAGRQAPGVCYRLWPQQQHERLDAHIRAEILDTDLAPLR
LTLLQWGAEADELFWLTPPPSAALQQAGDLLGQLGMLNAEGSGLSDHGNACARLGIEPRW
AHALLSAHALGHGQHACTLVALIQEWPATRRGSDDLLRLLSQAKQQRAIWQQRIQPLAQN
LWRTLQGLTPEASRTAINADDLPALLLALAFPDRIAKRRDQRDGFLLSNGRGAECSLESD
LPQADWLACTDLSVHPQRTVIRLAAELSASALASLEQIAPQLFSERTEIGWQDSGQFIAQ
RHQQLGQIRLRSQRLPKLTAEQWQAAWQDTIQQQGLNCLPWSDDALNLRARMALMHQHTG
APWPDVSDTALLHNGLDWLLPYLHNARHQRDLDKVDTHSALRNLLSWEHQQQLDKQLPTH
LSVPSGSRIAIDYTQQPPVLAVKLQEMFGYQDQPSVLNGKVPLLIHLLSPARRPLQVTAD
LPHFWRNAYTEVRKEMRGRYPKHPWPEDALSAEATRLTKAALQRRSGPV
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
ttgaacccgctgccaatcgacgatgtattacctgccctgcgccagtcgctagcgcaaccg
ggtgcggtgttgctcagtgcggcaccgggcgcaggtaaaaccacgcgggtgccgctggcg
ctattggacgagccttggctgaatgggcagcggattgtgatgttggagcctcggcgcatc
gcggcacgtcatgcggcacagtttatggcgcagcaactgggtgagtcggtcggacagcgc
gtgggctatcgcattcgtctggatacccgcgtgagtgcgcagacccgtattgaagtggta
accgaaggggtgctgacgcggctgttgcaggatgatccggagcttagcggtatcgggctg
gtgatctttgatgaattccacgagcgcaatctgcatgctgacctggccctggcgctgacg
catcaatgccagcaactgttacgccccgatctgcgtctgctgatcatgtcagccacgctg
gatgaacagaccctcaccgaggcgctggatgctcccttactggtgagcgaggggcgcagt
tttccggtcgatattcactatcagccgctgctgaatgccaatcaatccataatcgaacac
accgcccgggtgatacgccaggcgctgcagcatgacggtgatatgctggtgtttctgccg
ggtgtccgcgagattaagcaggtgcagcaggcactgagcgatctgccgccaacgactcat
atcttaccgctgcacggccagctgaatgatgccgagcagaaagccgccctcacccccgcg
ccaagcggtcagcgtaaagtgattctgacaaccaatattgccgagagctcgctgacggtc
gacggggtgcggatcgtggtagattccggtctggagcggcgcagtgtgtttcatctgtcc
agcggactgaataccctgaccacccgccagatctcccgtgcgtcggccacccagcgctgt
ggccgtgccggacgtcaggcacccggcgtctgttaccgtctgtggccgcagcaacagcat
gaacgcctggatgcccatatccgcgccgagatcctcgacactgacctcgccccgctacgg
ctgaccttactgcagtggggcgccgaggccgatgaactcttctggctgacaccgcccccc
agcgccgccctgcaacaagccggtgatctgctcgggcaactgggcatgctgaacgccgaa
ggcagcggccttagcgaccatggcaacgcctgcgcccgactggggatcgagccgcgctgg
gcacacgcgctgttatcggcgcatgcactgggacatggccagcacgcctgcaccctggtg
gcgctgatacaggaatggcccgccacccgacgcggcagcgatgatctgctcagactgctg
tcccaggccaaacagcagcgcgcgatctggcagcaacgcattcaacccctggcacagaac
ctctggcgcaccctgcaaggccttacgccagaagccagccgcacggcaattaatgcagac
gacctgcccgccctgctgctggcactggcctttccggatcgcatcgccaaacgccgggat
cagcgcgacggctttctgctcagcaatggccgaggcgccgaatgcagcctggaatcggat
ctcccccaggccgactggctcgcctgcaccgacctgagcgtccacccgcaacgcacggtg
atacgcctggccgccgaactctccgccagcgccctagcctcactggagcagatcgcgcca
caactcttcagcgaacgcaccgaaatcggctggcaggactcaggacagttcatcgcccaa
cgccatcaacaactcggccagatacgcctgcgcagccaacgcctgccaaagctaactgcc
gaacaatggcaagccgcctggcaagacaccatccagcaacaaggcctcaactgcctgccc
tggtcagacgatgcactcaacctgcgcgcacgcatggcgctgatgcaccagcataccggc
gcaccctggccagatgtcagcgatacggcgctgttgcacaatggactcgactggctactg
ccctacctgcacaacgcccgacaccaacgcgacctggacaaagtcgatacccacagcgcc
ctgcgtaacctgctcagttgggaacaccagcaacaactggataaacagctaccgacccac
ctgagcgtacccagcggctcacgcatcgccatcgactacacccaacaaccgccggtactg
gcagtcaaactccaggaaatgttcggctaccaggaccaacccagcgttctaaacggcaaa
gtcccgctactcatccacctgctctcccccgcacgccgcccgctgcaagtcaccgccgac
ctgccccacttctggcgaaacgcctataccgaagtccgcaaagaaatgcgaggccgctac
ccaaagcatccctggcctgaagacgcactcagcgctgaagccacccgtttgaccaaagca
gccttgcaacgccgcagcggtcctgtttaa
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