Nitrincola iocasae: F5I99_11140
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Entry
F5I99_11140 CDS
T06212
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
nik
Nitrincola iocasae
Brite
KEGG Orthology (KO) [BR:
nik00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nik03032
]
F5I99_11140 (topA)
03400 DNA repair and recombination proteins [BR:
nik03400
]
F5I99_11140 (topA)
Enzymes [BR:
nik01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
F5I99_11140 (topA)
DNA replication proteins [BR:
nik03032
]
Prokaryotic type
DNA Topoisomerases
F5I99_11140 (topA)
DNA repair and recombination proteins [BR:
nik03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
F5I99_11140 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
DUF2399
DUF6381
Ribosomal_L10
DUF7695
Motif
Other DBs
NCBI-ProteinID:
QEW07019
UniProt:
A0A5J6LEA1
LinkDB
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Position
complement(2411349..2413994)
Genome browser
AA seq
881 aa
AA seq
DB search
MGKTLVIVESPAKARTINKYLGSQYVVKSSVGHIRDLPTSGSGGTTDPKERARLAAQTRK
LSDEAKAAYKKTKAREQLIRRMGIDPEQGWAARYEILPGKEKVVDELKKLAANADEIYLA
TDLDREGEAIAWHLREAIGGDDSRFKRVVFNEITKKAIKEAFKEPGDLAMSRVNAQQARR
FLDRVVGYMVSPLLWEKVARGLSAGRVQSVAVRLVVDREREIRAFIPEEYWEVFASTISE
SGESLRLQVMRQGEKAFRPTSKDETDKLLALLKSADYRITGREDRATSSKPSAPFITSTL
QQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSEEAVATCRDYILDQFGERYLP
EQPIRYSSKEGAQEAHEAIRPSDVNQTADTLSGMESDAERLYDLIRRQFLACQMTPALYT
STRITVRASDFELAVKGRILRFDGYTRVLPARGKNDEDVILPDLKEGDTLSLQGLEPKQH
FTRPSPRYTEASLVKELEKRGIGRPSTYAAIISTIQDRGYVEVQGRRFYACKMGDIVTER
LSESFSDLMDYSFTARMEEYLDEVARGDLDWKALLDKFYKDFVQDLEQAQDPEAGMRPNA
PTPTDIDCPDCGRKMMIRTGSTGVFLGCSGYSLPPKERCKCTINLISGDEVVSADADEEA
ESRILRNKHRCKLCGTAMDSYLLDEKRKLHICGNNPDCPGYEVEQGSFRIKGYDGPTIEC
DKCGSDMQLKTGRFGKFFGCTNSECKNTRKLLRSGEAAPPKMDPVAMPELQCEKVDDTYV
LRDGASGLFLAASQFPKKRETRAPFVSELLPHKAEIDPKYHFLLTAPVQDEEGNPTIVRY
SRKTKEQYVMTEKEGKATGWRAFYDRGNWTVEQAKKRVSKS
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaaccctcgttatcgtggagtcaccggccaaggctcgcactatcaataaatac
cttggtagccagtatgtggtgaaatccagtgtgggtcatattcgagacctgccgaccagc
ggtagtggtggcactaccgatcccaaagagcgtgcacgtttggcagcgcagacgcgcaaa
ctgtctgatgaagccaaagcggcttacaagaaaaccaaagcgcgggagcaattgatccgg
cgtatggggatcgaccctgaacagggatgggcggctcgctacgaaattttgccgggtaaa
gaaaaggtggtagatgagctgaagaagctggccgccaatgctgatgaaatctatctggca
acggatttggaccgcgaaggggaagcgatagcctggcacttgcgcgaagccataggtggt
gatgatagtcgctttaagcgggtagtctttaatgaaataaccaaaaaagccatcaaggaa
gctttcaaagagccaggtgatctggccatgagtcgtgttaatgcacagcaggcacggcgt
tttcttgatcgggtggtgggttatatggtgtcgccactcttgtgggaaaaggtggcccgg
ggcttgtcggctggccgtgttcagtcagttgcggtacgcctggtggttgatcgtgagcgt
gaaattcgtgcgtttattcctgaagaatactgggaagtgttcgcctctacgatcagcgaa
agcggtgaatccctgaggctgcaggtgatgcgtcagggtgaaaaggcttttcgcccgacc
tccaaagatgaaaccgacaagctgctggcgctgctgaagagcgctgattaccgtattacc
ggtcgggaagatcgtgccaccagcagcaaaccgtctgcacccttcattacctcgacactg
caacaggccgccagtacccgactgggttttggggtcaagaaaaccatgatgatggcgcag
cgcttgtatgaagccggctatatcacttacatgcgaaccgactcaaccaacttgagcgag
gaagcagtcgctacctgtcgtgactatattctggatcaatttggtgagcgttacttgccg
gagcagccgatacgctacagcagcaaagagggcgcacaggaagcgcatgaggcgatacgt
ccctcagatgttaatcaaaccgccgatacactgagcggtatggagtctgatgctgagcgt
ctgtatgacctgattcggcggcaattcctggcctgtcagatgacgccagcactctatacc
agtacccggattaccgtgcgcgccagtgatttcgagctggctgtgaaaggtcgaattttg
cggtttgacggttatacacgggtattgccagcgcgcggcaaaaatgatgaagatgtgatt
ctgccagacctgaaagagggcgataccttatcgttgcaggggctcgagccgaaacagcac
tttacccgtccgtctccgcgctataccgaggcaagcctggttaaagagttggagaaacgc
ggcattggtcggccttcaacctatgcggcgattatttccactattcaggatcgtggttat
gtcgaagtccaggggcggcgtttctatgcctgtaaaatgggcgatattgtgacagaacgc
ctgagtgaaagcttttcagatctaatggactatagcttcaccgcgcgaatggaagaatat
ctggatgaagtcgcacgtggcgatctggattggaaagccttgctggacaaattttataaa
gactttgtccaggatctggaacaggctcaagacccggaagcgggtatgcgccccaacgcc
cccacgccgactgatatcgattgcccggattgcggccgcaagatgatgattcgtaccggt
agtacgggggtgtttttgggttgttccggctattcgttaccgcctaaggagcgctgcaaa
tgcaccatcaacctgatttccggtgatgaggtggtcagtgcagatgccgatgaagaggcc
gagtcgcgtatactgcgtaataagcaccgttgtaaactgtgtggtacggcgatggactct
tacttgctggatgaaaagcgcaagttgcatatttgtggtaacaacccagactgtccaggt
tatgaagtggagcagggtagcttcaggatcaaaggctacgatgggcctaccattgaatgt
gataaatgcggttctgatatgcagttaaaaaccggtcgcttcggtaagttttttggttgc
accaattcagaatgtaaaaatactcgtaaacttttacgtagtggtgaagcggccccgcct
aaaatggatccagttgcaatgcctgaactgcagtgtgagaaggtggatgacacctacgta
ctgagagatggtgccagtggcttgtttttggctgccagtcagtttccgaaaaagcgtgaa
acgcgtgcgcctttcgtcagtgagctgttaccgcataaagccgaaattgatccaaagtat
cactttctgttaaccgcacctgttcaggatgaggagggtaacccgactattgttcgctat
agccgcaaaaccaaagaacagtatgtaatgactgagaaagaaggtaaagcaaccggttgg
cgtgctttttacgacagaggcaattggacagtcgagcaagccaaaaagcgtgtttccaaa
tcttga
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