Nitrincola iocasae: F5I99_11955
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Entry
F5I99_11955 CDS
T06212
Name
(GenBank) PAS domain-containing protein
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
nik
Nitrincola iocasae
Pathway
nik03030
DNA replication
nik03430
Mismatch repair
nik03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F5I99_11955
03430 Mismatch repair
F5I99_11955
03440 Homologous recombination
F5I99_11955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nik03032
]
F5I99_11955
03400 DNA repair and recombination proteins [BR:
nik03400
]
F5I99_11955
Enzymes [BR:
nik01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
F5I99_11955
DNA replication proteins [BR:
nik03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
F5I99_11955
DNA repair and recombination proteins [BR:
nik03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
F5I99_11955
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
PAS_4
Rv2179c-like
MFS_1
DUF6722
PAS_8
Motif
Other DBs
NCBI-ProteinID:
QEW07161
UniProt:
A0A5J6LG28
LinkDB
All DBs
Position
2584248..2586284
Genome browser
AA seq
678 aa
AA seq
DB search
MPKRQFLLGIWMLATGLVSFTAIVLGALLDSQISADPSSRILLWITALLTPAAMLFIGFW
LERKLFSPLRHLQIQFARLAANPDARDDFNPEGWLSGLSSDFSRLREGWRNDRELLSSAW
EEGARDAARIRHELEAVLAVLETPLLLCDKHQRVLMLNPAAKAFFSNHPALGLGRNLQQL
LPLPNLTEALKKLPTDDSPRQLLLHHEGRWLRCDLRRVRANQGEALLTLTDTTDTHESHQ
RWRQPLAQLLPELRGHTASLTTTAEALSGSTADSDIHLRLENAMHEESRILGELIEQLSR
VLESLQLDQTCLSDTWSVDLTSAMTELWEDKTITITPIGIPAWFRADSPTLLAMLEALLP
TLSNTINNKAFDIEFCLGNKRVYLDLIWEGQPVSQSTLETWRALPLTEQPLAPRIGDVLS
QHNSDWWCLPDHDREHARLRIPLPATDRYAEPDRKTEPRPEFHDFSIAELPPPDSELGNC
LLKQLEMAVFDTETTGLKLREGDTVVSIGACRIINGRLQANEQFDQRVNPGIPIPAESTR
IHGLSDADVRDAPPLAVVLPRFHNYVGQAVLVAHNAAFDLLAINLPGQEAGIHFDMPVLD
TLLLSRAIDPSLEQHGLDALSERFQITFPVGTRHTALGDARVTAELMLNLIPRLEARGIH
TLQQALALQATAETVRVG
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaacgtcagtttcttctgggtatctggatgctggcaacaggcctggtttccttt
acggccatcgtcctcggtgcactgctggatagccagatcagcgctgatccgtccagtcgt
attctgctatggatcacggcactactaactccggcagcaatgctgtttatcggcttctgg
ctggagcgtaagcttttctccccattgcgacatcttcagattcaatttgcccggcttgca
gccaatccagatgccagagatgactttaacccggaaggctggcttagcggtctaagcagt
gacttttcgcgcttgcgtgagggttggcgcaatgaccgggagctactcagctctgcctgg
gaagaaggcgcccgtgatgcggcgcggatacgccatgaacttgaagctgttctggccgta
ctggaaacacctctgttactgtgcgacaaacaccagcgtgttctcatgctgaatcccgcc
gctaaagccttttttagtaatcatccggcattaggtctggggcgcaatctgcagcaattg
ctgccgttacccaaccttactgaagccctgaaaaagctccctaccgacgacagcccccgg
caactgttactccatcatgaaggacgctggctgcgttgcgacctgcgccgcgttcgcgcc
aaccagggcgaagccttactgaccttaacagacaccaccgatacgcatgaaagccatcag
cgctggcgacagccactggcacagttattaccggaacttcgaggccatacagccagcctg
accacgacggctgaagcgctgagtggatcaacagcagacagcgacattcacctccggctt
gaaaacgccatgcatgaagaaagtcgcattctgggcgaactgatcgaacagttatctcgc
gttctcgaatcgctgcaactggatcagacctgcctatctgatacctggtcggttgacttg
accagtgccatgaccgagctctgggaagataaaaccatcaccattacccccatcggtatc
cccgcctggtttcgggctgacagcccaacgctactggctatgctggaggcgctgttaccc
acgctaagcaacacgatcaacaacaaagcctttgatatagagttctgtttaggtaacaag
cgcgtttatctggacctgatctgggaaggtcaaccggtgtcccagagcactctggaaacc
tggcgcgccctacccctgaccgagcagcccctggccccgcgcatcggtgacgtgttaagt
cagcacaattctgactggtggtgcctgccagatcatgatcgcgaacatgcgcgcttgcgc
atcccactacccgcaactgaccgttatgccgaacctgatcgaaaaaccgaaccccggccg
gagtttcatgacttcagtattgccgaactaccgccccctgacagtgaactgggcaactgc
ctgttgaaacaactggaaatggctgtttttgacaccgaaaccaccggactaaaactacgt
gagggtgataccgttgtcagcataggtgcctgccgtatcatcaatggtcgcttgcaggcc
aatgagcagtttgatcaacgggtcaaccccggcataccaatcccggctgaaagtacgcgt
atccatggactcagtgatgcggatgtacgtgatgcaccacccctcgcagtggtgctaccg
cggtttcacaattatgtcggacaggcggttctggtggcccataatgccgcgtttgacctg
ctggccattaacctgccgggacaggaagctggcatccacttcgatatgccagtgctggat
acattgttattgtcgcgtgccattgaccccagcctggagcagcatggactggatgcgctg
tcggagcgttttcagattacctttccggtgggcacacgccataccgccttgggtgatgca
cgtgtcacggccgaattaatgctcaacctgattccgcgactggaagcgcgtggtattcac
acactgcagcaagctctagcactccaggccaccgctgaaacagtcagggtgggctag
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