Nitrincola iocasae: F5I99_12220
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Entry
F5I99_12220 CDS
T06212
Name
(GenBank) serine hydroxymethyltransferase
KO
K00600
glycine hydroxymethyltransferase [EC:
2.1.2.1
]
Organism
nik
Nitrincola iocasae
Pathway
nik00260
Glycine, serine and threonine metabolism
nik00460
Cyanoamino acid metabolism
nik00630
Glyoxylate and dicarboxylate metabolism
nik00670
One carbon pool by folate
nik00680
Methane metabolism
nik01100
Metabolic pathways
nik01110
Biosynthesis of secondary metabolites
nik01120
Microbial metabolism in diverse environments
nik01200
Carbon metabolism
nik01230
Biosynthesis of amino acids
nik01240
Biosynthesis of cofactors
nik04981
Folate transport and metabolism
Module
nik_M00975
Betaine degradation, bacteria, betaine => pyruvate
Brite
KEGG Orthology (KO) [BR:
nik00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
F5I99_12220
09102 Energy metabolism
00680 Methane metabolism
F5I99_12220
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
F5I99_12220
09106 Metabolism of other amino acids
00460 Cyanoamino acid metabolism
F5I99_12220
09108 Metabolism of cofactors and vitamins
00670 One carbon pool by folate
F5I99_12220
09150 Organismal Systems
09154 Digestive system
04981 Folate transport and metabolism
F5I99_12220
Enzymes [BR:
nik01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.2 Hydroxymethyl-, formyl- and related transferases
2.1.2.1 glycine hydroxymethyltransferase
F5I99_12220
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SHMT
Aminotran_1_2
Beta_elim_lyase
DegT_DnrJ_EryC1
Cys_Met_Meta_PP
Motif
Other DBs
NCBI-ProteinID:
QEW07210
UniProt:
A0A5J6LF06
LinkDB
All DBs
Position
complement(2643930..2645225)
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AA seq
431 aa
AA seq
DB search
MINRDGYSRLDSIQAYDADLAQMLNEEQQRQEAHIELIASENYTSIRVMEAQGGQLTNKY
AEGYPGKRYYGGCEAVDKVEALAIERACKLFGARYANVQPHSGAQANAAVFMAMVNPGDT
ILGMSLAHGGHLTHGAAPNFSGKYYKAVQYGLNPDTGEIDYDEVERLAREHQPKMIIAGF
SAYSLIVDWARFRQIADEVGAVLFVDMAHIAGLVAAGLYPSPLPFADVVSTTTHKTLRGP
RGGLILTASDDEALHKKLNGAVFPGQQGGPLMHVIAAKAVAFKEAMEPEFITYQQHVLGN
AQAMAGVFIERGYEVISGGTKDHLFLLSLISQGLTGKAADAALGRAHITVNKNSVPNDPQ
SPFVTSGLRIGTPAVTSRGFGVSECRTLSGWICDILDVMSAGQATDAIEASVRDKVAELC
ARFPVYTETRA
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgatcaaccgtgatggttattcccgactcgactcgatccaggcatatgatgccgatctg
gcgcagatgctgaatgaagaacagcagcgtcaggaagcgcacattgagctgattgcgtcc
gaaaactataccagtatccgggtgatggaagcgcagggtgggcaactgaccaacaagtac
gcagaaggttatccgggaaagcgctattacggcggctgtgaagcggttgataaggtcgaa
gcgctggcaattgagcgtgcctgcaagctcttcggtgcccgctacgccaatgtgcagcca
cactcgggtgctcaggccaacgcggcggtatttatggcgatggtgaatcctggtgatacc
attctgggaatgagcctggcgcatggtggtcacctgacccatggtgctgcgccgaacttc
tccggcaagtattacaaagcggtgcaatatggactgaatcctgacacgggagaaatcgat
tacgatgaggtggagcggctggcacgtgagcatcagccaaagatgatcattgccggattt
tcagcctattcgctgattgtggactgggcacgttttcgtcagatcgctgatgaagtgggt
gcggtactgtttgtggatatggcgcatattgccggcttggtcgctgcaggactttacccc
agccccttaccctttgccgatgtggtctcaaccactacacacaaaaccctgcggggtcca
cgcggtggtttgattctgacggcaagtgatgacgaggctctgcataagaagctcaatggt
gcggtcttcccaggtcagcagggcgggcccttgatgcatgtgattgccgccaaagcggtt
gccttcaaagaagcgatggaaccggagtttatcacctaccagcagcatgtattgggtaat
gcccaggcgatggccggcgtgtttattgagcggggatacgaggtgatttccggtggtacc
aaagatcatctgttcctcttgtcgctgatcagtcagggtttgaccggaaaggctgctgat
gcggctttggggcgtgcgcatattaccgtcaacaaaaattcggtgcctaacgatccgcag
agtccgtttgttacctcgggtttgcgtattggcacacccgctgtgacttctcgtggcttt
ggtgtgagtgaatgtcgcaccctgtcgggttggatctgtgacattctggatgtgatgagt
gccggtcaagcaactgatgcaatcgaagccagcgtacgcgacaaagtggctgagctttgt
gcccgtttccccgtttacaccgaaacccgcgcctaa
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