Nitrincola iocasae: F5I99_13255
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Entry
F5I99_13255 CDS
T06212
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
nik
Nitrincola iocasae
Pathway
nik03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nik00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
F5I99_13255
09124 Replication and repair
03420 Nucleotide excision repair
F5I99_13255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nik03021
]
F5I99_13255
03036 Chromosome and associated proteins [BR:
nik03036
]
F5I99_13255
03400 DNA repair and recombination proteins [BR:
nik03400
]
F5I99_13255
Enzymes [BR:
nik01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
F5I99_13255
Transcription machinery [BR:
nik03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
F5I99_13255
Chromosome and associated proteins [BR:
nik03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
F5I99_13255
DNA repair and recombination proteins [BR:
nik03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
F5I99_13255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
ResIII
Motif
Other DBs
NCBI-ProteinID:
QEW07381
UniProt:
A0A5J6LGR0
LinkDB
All DBs
Position
2876422..2878731
Genome browser
AA seq
769 aa
AA seq
DB search
MKVAVRSLCEFAAREGSLEHRYTPSPTADEGIQGHKTLQSRRPNSYQPEYLLEGECLDIH
LRGRADGYLPGYLPDHLANKHTPLVEEIKTHRGDLARIGPGQRHLHEAQLKVYGALLCQR
DNLRQVQLRLVYYDITQDRETPFGQLWQRQDLDDFLTELCSRYRDWHQQESAHRQLRDQA
LMTLTFPFTDFRPHQRQLSETVYKGICTGHTLLLEAPTGIGKTIGVSYPALMAMPRRQLD
RLFILTARTTGRQLILDSLQSLQASRDTPLPLRILELTARDKACEYPDRACQGESCPLAD
GFFDRLPAARQAAVNANWLDRSSIQMLAAEHRICPYYLAQELARWSDVVVGDVNHYFDQQ
ALLYGLTRQNDWRVVPLIDEAHNLIDRARSMYSSQLSQTQFRHVARTAPKELSTTFRAVQ
RAWRQLIKSHLDTEASSDLQTVQFHLSEVPTELNGALQRLVRDLSDYMTDHPVLPELQSL
LLDSIGFMKLAELFADHSLCTLTVKQEKGKGKRPTFKASLSIQNLIPADFLTQRFRQAQA
SVLFSATLNPAHYYRDLLGLPEKTRWQSIPSPFSARQLELRIIRISTRFNDRQSSIQPIV
QRIRQQYRQTPGNYMVYLSSFAYLEQLRSAFVAHCPDIPIMTQSSGMAEQARLEFIQAFR
TERGKVGFAVLGGAFSEGIDLPGDALVGVFIATLGLPPYDDFHEQLSQRLQARFGQGYNY
TYLYPGIRKVIQAAGRLIRTPEDTGVVELIDDRFSRQPVQSLLPAWWFD
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagtggccgtgcgctccttgtgcgaatttgccgcgcgcgaaggcagcctggagcat
cgttataccccctcacccaccgcagatgaagggatacaagggcacaaaaccctgcagtcc
cgaagacccaacagctaccaacctgaatacctgctggaaggcgaatgcctggacattcac
ctgcgcggtcgtgcggatggctacttacccggttacttgccagaccacctagcaaataag
cacacacccctggtggaagaaatcaaaacccaccgcggcgatctcgcccgtatcggcccg
ggtcagcgccacctgcatgaagcacaactgaaggtatacggcgccctgctttgccaacgc
gataacctgcgtcaggtccagcttcgcctggtctactacgatattactcaggatcgggaa
acgccgtttgggcagctgtggcagcgtcaggatctggatgattttctgacagaattgtgc
agccgttatcgtgactggcaccaacaggagtctgcgcatcgacaactacgcgatcaggcg
ttgatgacgctgaccttcccctttacggactttcgtcctcaccagcgccaactcagtgag
acggtgtataaaggcatctgtaccgggcatacgctgttgctggaagcacctactggcatc
ggcaaaaccatcggcgtcagctacccggccttgatggccatgcccaggcggcagctcgac
aggctgtttatactcaccgcacgaaccaccggtcgccagctgattctcgacagcctgcaa
agcctgcaggcatccagggataccccgttacccttgagaatacttgaactgaccgcgcgt
gataaagcctgtgaatacccggatcgcgcctgccagggtgaatcctgcccgttagccgat
ggcttcttcgacagattacccgcagctcgacaagccgcagtcaatgccaactggttagac
cgatcaagtatccagatgctcgcagcagagcatcgcatttgcccctactatctcgctcag
gagctggcacgctggtcagatgtggtggtcggtgatgtgaaccactactttgatcagcag
gcactgctctatggactgactcgacaaaatgactggcgggtggtgccgttgatcgatgaa
gcccacaacctgatcgatcgcgcccgcagcatgtactcaagtcagctgagtcagacgcag
tttcgccatgtcgcccgcactgcacccaaggaactcagcaccaccttccgggcagtgcaa
cgcgcctggcgccagctgattaaaagtcatctggatacggaggccagctctgacctacag
actgtacagtttcatctgtctgaggtgccgactgaactgaacggcgccctgcaacgcctg
gtcagagacctgagcgattacatgacagaccatccagtgctgccagaactacagtcattg
ctgctggattcgatcggttttatgaaactggcggaactctttgccgatcattcactctgt
acgctgaccgtgaagcaggaaaaaggtaaaggaaaacgcccaactttcaaagccagcctg
tcgatacaaaacctgattccggctgactttctaacccagcgttttcgccaggcccaggcc
tctgtgctcttctcggccacgctcaatcccgcgcactactaccgtgatctgttgggttta
ccggagaaaacccgctggcaatccattcccagccccttctcggccagacagcttgagctc
agaataatccgcatcagcacccgattcaatgaccggcagagttcaattcaaccgatagtt
cagcgtatccggcagcagtaccgccagacgccgggcaactatatggtctacctcagcagc
tttgcttatctggaacaactacgcagtgcatttgtggcacactgcccggacatacccatc
atgacccagtcatccggtatggccgaacaggcccggcttgaatttatacaagccttccgg
acagaacgcggcaaagtcggctttgcggtactcggtggtgctttctcggaggggatcgac
ctgcctggcgatgcactggtcggtgtgttcatcgccacactgggcctgccgccctacgac
gactttcacgagcaactgagccaacgcctgcaggcacgctttggtcaggggtataactac
acctacctttaccctggcatccgcaaagtaattcaagcggcgggacgcctgatacgtact
ccggaagacacgggtgtggtggaactgatcgatgatcgatttagccgtcagccagtacag
tcgctattgcctgcctggtggtttgactga
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integrated database retrieval system
