Nitrincola iocasae: F5I99_15040
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Entry
F5I99_15040 CDS
T06212
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nik
Nitrincola iocasae
Pathway
nik03030
DNA replication
nik03430
Mismatch repair
nik03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F5I99_15040 (dnaE)
03430 Mismatch repair
F5I99_15040 (dnaE)
03440 Homologous recombination
F5I99_15040 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nik03032
]
F5I99_15040 (dnaE)
03400 DNA repair and recombination proteins [BR:
nik03400
]
F5I99_15040 (dnaE)
Enzymes [BR:
nik01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
F5I99_15040 (dnaE)
DNA replication proteins [BR:
nik03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
F5I99_15040 (dnaE)
DNA repair and recombination proteins [BR:
nik03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
F5I99_15040 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HHH_3
Motif
Other DBs
NCBI-ProteinID:
QEW08641
UniProt:
A0A5J6LL41
LinkDB
All DBs
Position
complement(3265754..3269260)
Genome browser
AA seq
1168 aa
AA seq
DB search
MTADSFVHLRVHSEYSLYDGLVKVKKLVAAATQQQMPAVALTDQTNLFALIKFYKAAVAE
GIKPICGVDLWLAHPEDDSAEPSRLTLLVRNGRGYKNLMELVSRAYAEGQSLQDDRALVR
REWVREKAEGLIALSGASRGEVGRALLEGHTDQAMALLQEWMAVFPEAFYLEIQRTGRVN
DEELVHASAALASQAGCPLVATNEVMFLYADDFDAHEARVCINQSRTLADPSRPRDYSEQ
QYFRSSQEMAELFADLPSAISNSVAIARRCNIEIELGTYYLPEYPIPEGMTMDEFFRKES
FDGLAFRLETILDPADPDYAAQRQLYDERLTFELDIIIQMGFPGYFLIVMDFIQWAKDND
IPVGPGRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDIDFCMDNRDRVI
DYVADRYGRDAVSQIITYGTMAAKAVVRDVARVQGKPFGLADRLSKMIPFEVGMTLGKAI
EQETLLKEFIEGSEEAAEIWEMALKLEGITRNVGKHAGGVVIAPTRLTDFSATYCDEQGQ
GLVTQYDKNDVEEAGLVKFDFLGLRTLTIIDWALRTINHLRRRKGEEDLTIESIDLEDPQ
VFQMLQRAETTAVFQLESSGMKDLIRRLQPSRFEDIIALVALFRPGPLQSGMVDDFINRK
HGRAPLAWPHPDYQLDSLQPVLEPTYGIILYQEQVMQIAQVMAGYSLGEADLLRRAMGKK
KAEEMEKQRQFFLDGSVNQGIDVGLAGSIFDLVEKFAGYGFNKSHSAAYALVSYQTAWLK
AFYPAPFMAAVLSSDMQNTDKVVIFIEECRQMKLVVNLPDVNASEFMFTVNDAGEIVYGL
GAVKGVGEGPVEAIVSARQQGGDFTDLFDFCARVGVKRLNKRVMEALVRSGALDKLGARR
AVLWQAIAAALQTADQAARNADAGMLDLFGEVVEETSTDPYAEFTQVRDWTDKERLLGEK
ETLGLYVTGHPIDEYEPELSRLVSRKLVDIQPQRGRTQKMAGLVVDLRIKKTKKGDNLCI
LTLDDRSARMEITLFGDTYEASRHLINKDVVLVIEGEVAPDDYNGGVRVRGQSVMNVTQA
RARHASRIEICCDQSSLTAARLRQLSDCLTSTRQATEKLPLALRFRRADAEGDLLLGEAW
HSEPSDDQIIALKEIFGNPAVRLVWPDN
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgatagctttgtacacctgcgtgtacacagtgagtattcactttatgacggc
ttggttaaggtcaagaagctggttgccgccgcaacgcaacaacagatgcctgccgttgcc
ctgaccgaccagaccaacctgtttgcactgataaagttctataaagccgccgtagccgag
gggattaaacccatttgtggtgtggatctctggttggctcaccctgaggatgatagtgct
gaaccctcgcgcctgacgcttttggttcgtaatggtcgtggttataaaaacctgatggag
ctggtgtcgcgcgcctatgctgaaggccagtcgctacaggatgaccgggctctagtgcgg
cgcgagtgggtcagggaaaaggccgagggtttgattgccttgtctggggcgtcacgcggt
gaagtggggcgggccttgctggaggggcatacggatcaggcaatggcgttgctgcaagag
tggatggcagtatttcccgaggccttctatctggaaatacaacgtaccgggcgtgtcaat
gatgaagagctggtacatgccagtgcggcgttggccagtcaagccggttgccctctggta
gcaaccaacgaagtcatgttcctgtatgccgatgattttgacgcgcatgaagcgcgggta
tgcatcaaccagagccgaacactggctgatccttcacgtccgcgtgattactcagaacaa
cagtattttcgcagtagtcaggaaatggcggagttatttgctgatctgccatcagcaatc
agtaacagtgtcgccattgctcgacgttgcaatattgagatagagctgggaacttactat
ctaccggaataccccatccctgaggggatgacgatggatgaatttttccgcaaagagtcg
tttgatggcctggcctttcgtttagagactattctggatcccgccgatccggattatgcc
gctcagcgccaactctatgatgagcgcctgacatttgagctggatattattattcagatg
ggcttcccgggttacttcctgatcgtcatggacttcattcagtgggccaaggataacgat
attccggtaggcccgggaagggggtcaggtgctggctcactggtagcctatgcgctgaaa
atcactgatctggatccgctcgaatatgacctgctgttcgagcgatttttgaatcctgaa
cgtgtttccatgcccgactttgatatcgacttctgcatggataaccgtgatcgggtaatc
gattatgtggccgatcgttatggtcgtgatgcggtatcgcagatcatcacctacggtacc
atggcggcgaaggcggtggtgcgtgacgtggcccgggttcagggcaagccgtttggtctg
gcagatcgcttgtcaaaaatgattccctttgaagtgggcatgacgctgggtaaagcgatt
gagcaggagacgctgctcaaggagttcattgaaggtagtgaagaggccgccgaaatctgg
gaaatggcgctcaaactggaggggattacccgcaacgtaggtaagcatgcgggcggggta
gtgattgcgcccactcgcctgacagatttttcggcgacctattgtgatgagcagggacaa
ggtctggtcacccaatatgacaagaatgatgtcgaagaagccggtctggtcaagtttgac
tttctggggttgcgtaccctgacgattattgattgggccttacgtaccatcaatcacttg
cgtcggcgtaaaggtgaggaagatctcaccattgaaagtatcgaccttgaagacccgcag
gtgtttcagatgttgcagcgagcggaaactaccgcagtgtttcagctggaatcctccggg
atgaaagatctgatccgccgtctgcagcccagccgttttgaagatattatcgccctggtg
gcgctgtttcgtcccggacccttgcagtcaggcatggtggatgactttatcaaccgtaag
catggtcgagcccccctggcctggccgcaccctgattatcaactcgacagtttgcagccg
gtactggagccaacctatggcatcatcctgtatcaggaacaggtcatgcagattgcccag
gttatggcgggttattcactcggtgaagccgacttgttgcgtcgtgcgatgggtaaaaag
aaagccgaagagatggaaaagcagcggcagtttttcctggatggttctgttaatcagggt
atcgatgtcggtcttgccggtagtatctttgatctggtagagaaatttgccggttatggt
tttaacaagtcgcactcagccgcttatgccttggtgtcttatcagaccgcctggttgaag
gctttctatccggcacccttcatggcagcggtgctttcttcggatatgcagaacaccgat
aaagtggtgatcttcattgaagagtgccggcagatgaaactggtcgtgaatctgcctgat
gtcaatgccagtgagtttatgtttaccgtgaatgacgccggtgaaatagtgtacggtctg
ggcgccgttaaaggtgtcggtgaagggccggtcgaagcgattgtcagcgcacgccagcag
ggcggcgactttactgatctgttcgatttttgtgcccgcgtgggcgttaaacgccttaat
aagcgggtgatggaagccctggttcgtagcggggcactggataaactcggcgccaggcga
gcagtactctggcaggcgattgctgcggcgttgcaaacagccgatcaggcggctcggaat
gccgatgctggcatgcttgatctgtttggtgaagtggtcgaagagacatcaactgatcct
tatgctgaatttacccaggtgcgcgattggacggataaagagcgcttgctgggtgagaag
gaaaccctcggtctttatgtgaccgggcatcccatcgatgagtatgaacctgaattatcc
cgcctggtgagtcgtaagctggtggatatacagccccagcgcgggcgtacacagaaaatg
gctggattagtcgtggatctgcgtatcaagaaaaccaagaagggcgataacctgtgcatc
ctgacgctggatgatcgcagcgcacgcatggaaatcaccctgtttggtgatacctatgag
gcctcgcggcatctgatcaataaagatgtggtattggtgatcgagggtgaggtggccccg
gatgactataatggcggcgtgcgtgtacgcggtcagagtgttatgaatgtgacccaggcc
agagcacgccatgccagccggattgaaatctgttgtgatcagtcttcgttgaccgctgcc
cggctgcgacaactcagtgattgtctgaccagcacccgccaggcgacagagaagctcccc
ctggctttacgctttcgccgtgcggatgcagaaggggatttgcttctgggcgaagcctgg
cactcggaaccctctgatgatcagattattgccctgaaagagatctttggtaatccggca
gtacgtctggtttggcctgacaactga
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