Nitrincola iocasae: F5I99_15920
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Entry
F5I99_15920 CDS
T06212
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nik
Nitrincola iocasae
Pathway
nik03410
Base excision repair
nik03430
Mismatch repair
nik03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
F5I99_15920 (recJ)
03430 Mismatch repair
F5I99_15920 (recJ)
03440 Homologous recombination
F5I99_15920 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nik03400
]
F5I99_15920 (recJ)
DNA repair and recombination proteins [BR:
nik03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
F5I99_15920 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
F5I99_15920 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F5I99_15920 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
DUF2065
Motif
Other DBs
NCBI-ProteinID:
QEW07858
UniProt:
A0A5J6LH95
LinkDB
All DBs
Position
complement(3451940..3453676)
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AA seq
578 aa
AA seq
DB search
MSSALIQRRTSTVDSVAALDALHPVLARVYAARGITDPTQIGRNLHELLPDTRMKGMATA
VARLVDALHKQESILIVGDFDCDGATSTALAMLALRMMGAKKVSYLVPNRFEFGYGLSPE
IVEVAARQQPQLIVTVDNGISSVDGVERATQLGLDVIITDHHLPGDKLPAACAIVNPNQY
GCEFIAKSTCGVGVIFYVMIALRRSLLQQGYFEQRGIQAPNLASLLDLVALGTVADVVAL
EHNNRTLVHQGLLRIRAGQARPGILALLEVAGRRREQLMAADLGFAIAPRLNAAGRLEDM
SIGIECLLCDDPQQAQEFAQLLNDLNIERRSIEREMQQQALDILADLPLSETEMPWGVCL
FDPGWHQGVVGILASRIKERLHRPVIAFAPGEGDEVKGSARSIPGFHIRDGLDAIAARHP
GLLRKFGGHAMAAGLSLAQQDLGAFRQAFDQEVRARLASQDLQRILMTDGPLAETDLNLE
LAALLQDAGPWGHQFPEPVFDGEFRVLQQRIVGYRHLKLVVMPVGGSLAVDAITFNVDTE
LWPDESVQQVRMVYRLSRNEFRGQVSLQLMVDTVIPIS
NT seq
1737 nt
NT seq
+upstream
nt +downstream
nt
atgtcttctgcattgatacaacgccgcacctcaactgttgattccgttgctgcactggat
gcccttcatcctgttctggcacgggtgtatgcggcacggggcattactgatccaacccag
atcgggcgtaacctgcatgagttgttgcccgatacccggatgaaggggatggcgaccgct
gtcgcgcgtctggtcgatgccttgcacaagcaggagtcgatcctgattgttggcgatttt
gattgtgatggagcgaccagtacggccttggcaatgctggcactgcggatgatgggtgca
aagaaagtcagctatctggtgcctaaccgttttgaatttggttatggcctgagcccagag
atagtcgaggtggcggcccggcagcaaccgcaactgatcgtcacggtcgataacggtatt
tccagtgtagacggcgttgagcgggccacacagctcgggctggatgtaattatcactgat
catcacctacctggggataagcttccggcggcctgtgccatcgtcaaccccaatcagtac
ggctgtgaatttatcgccaagtccacttgcggtgtcggggtgattttttatgtcatgatt
gccttgcgccggtcactactgcagcagggctattttgaacaacggggtattcaggcgccc
aacctggcgagtctgctggatttggttgctttgggtactgtggctgatgtggtggcgctg
gagcacaataaccgcaccctggttcatcaaggcttgttacgtatccgtgccggccaggct
cgtccaggcattctggcactgctggaggtggccggacggcgtcgggagcagttgatggcg
gcggatctgggctttgctatcgcgcctcggctgaatgcagctgggcgcctggaagatatg
tcgattggtattgaatgcctgttgtgtgatgatccgcagcaggcgcaggagttcgctcaa
ctgcttaatgatctgaatattgagcggcgcagtattgagcgtgagatgcagcagcaggct
ctggatatactcgccgacttgccgttgagtgagaccgaaatgccctggggcgtttgcctg
tttgatcctgggtggcaccagggggttgtgggtatcctggcatcgcgtatcaaggagcga
ctgcatcgcccggtcattgcgtttgccccgggagaaggggatgaggttaaaggatcagca
cgttccattccagggtttcatattcgtgatggactggatgctatagcggcgcgtcatcct
gggttgttacgtaaatttggcggccatgcgatggcggctggcttatccctggcacaacag
gatctgggggcttttcgtcaggcgtttgatcaggaggtcagagcacgtttggcatcacag
gatcttcagcgtattctgatgacagacggccccctggctgaaactgatttgaatctggaa
ctggcggcattgctgcaggatgccggtccctgggggcatcagttcccggaacctgtgttt
gatggcgaattccgggtgttgcagcagcgtatagtcggttatcgtcacttgaaactggtg
gttatgccagtcggaggctcgctggcagtagacgcgattaccttcaatgtggatactgaa
ctttggccagatgagtctgttcaacaggttcgcatggtttatcgcctgtctcgcaatgag
tttcgcggacaggtcagtctgcaattgatggtggatacagtgatcccgatatcctga
DBGET
integrated database retrieval system
