Niallia sp. Man26: L8T27_000325
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Entry
L8T27_000325 CDS
T09959
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nil
Niallia sp. Man26
Pathway
nil03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
L8T27_000325 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nil03400
]
L8T27_000325 (mfd)
Enzymes [BR:
nil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
L8T27_000325 (mfd)
DNA repair and recombination proteins [BR:
nil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
L8T27_000325 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
MFD_D3
Cas3-like_C_2
RecG_dom3_C
CRISPR_Cas9_WED
IstB_IS21
DUF3638
UB2H
Motif
Other DBs
NCBI-ProteinID:
UPO87729
LinkDB
All DBs
Position
1:60485..64027
Genome browser
AA seq
1180 aa
AA seq
DB search
MLGLKKLFNKQEDIKNVMSGVEAGLKEQIVSGLSNSARTLFMTSIYEQTKRPVVVVAPNL
LQAQKLYDDITNVVDEKEVFLYPANELIAAEISISSPELKAQRIEVLNHWTNDKTAKGIL
IVPVAGLRKMLPPKSLWQAQQIELEVGKDINLEELIQRFVTTGYVRTDMVSAPGDFSLRG
GILDIYPLTEEYPLRMELFDTEIDSIRTFSLEDQRSKEKLSSITIGPATEVIINTVELEA
FAAKVETGLAKSLKKIKDEKTKTLLAQNIGHEIEQLKNGQKPEQLYKYLSLLYPDHTSLI
DYLPKNGLVFIDEISRVQEMNDTLEKEEADWYTGLLNEGEIIHDMKLSQNVQDLLHKAVQ
PIVYMSLFLRHVPNTNPQNIINVTCKQMQSFHGQMNVLKSEMDRWKKNKYSVLVLANNQE
RLEKLEQVLQDYDIQADIQTDNDRIATGKIQLLEGSLQSGFEMPLLKLAVITEEELFKTK
VKKSSARRQKLSNAERIKSYSELKIGDYVVHVNHGIGKYLGIETLQINGIHKDYLHLRYQ
GSDKLYVPVDQIDLVQKYVGSESKEPKIYKLGGNDWKKVKKKVESSVQDIADDLIKLYAE
REAAVGYGFSPDGEMQREFESSFAYQETEDQLRSIHEIKRDMERERPMDRLLCGDVGYGK
TEVAIRAAFKAIADGKQVAFLVPTTILAQQHYETLRERFQDYPIEIGLLSRFRTRKQQTD
TIKGLKAGTFDIVVGTHRILSKDITYRDLGLLIIDEEQRFGVTHKEKIKQLKTNIDVLTL
TATPIPRTLHMSMLGVRDLSVIETPPENRFPIQTYVMEYNGALVREAIERELARNGQIYF
LYNRVEDIERKAEEISMLVPDARVTYAHGQMTENELESVMLSFLEGEFDVLVSTTIIETG
VDIPNVNTLIVQDADRMGLSQLYQLRGRVGRSNRVAYAYFTYRKDKVLTEVAEKRLQAIK
EFTELGSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKDAIEERKGTFDEQQ
KQTIDLDLDIDAYIPDFYISDGQQKIEMYKRFRGVASFDELSELQDEMVDRFGDYPSEVA
YLFKLTEMKLYGKAAGVELIKQSKEEVLILLSEHGSSLMDGQKIFEKSSKFGRMIGLGMD
GKKLKIVLHVKGIETDKWLNACYEMVEALSTFKKEPQEAS
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
ttgttaggcctaaaaaaattattcaataaacaggaagacattaaaaatgtcatgtctggt
gttgaggcggggttgaaggaacaaatagtttctggtttatctaactctgcaagaacacta
tttatgacttctatatatgagcaaacaaaaagaccagtggttgtagtagcaccaaatctg
cttcaggcacaaaaactttatgatgatataactaatgtagtggacgagaaggaagtattc
ttgtaccctgccaatgagcttatagctgctgaaattagtatctccagtccagaattaaag
gcacagcggattgaagtgctaaaccactggacaaatgataaaacagctaaagggatactg
attgtccctgttgcgggtttgagaaagatgcttccaccaaaaagtctgtggcaagcacag
caaattgaacttgaagtcggtaaggatattaatctggaagagctcatccaacgctttgtt
acgactggatatgtacgaacagatatggtttctgcccctggtgacttcagtttaagaggg
ggtatattggatatttatcctttaactgaggagtatcccctacgtatggaattgtttgat
acagaaattgattctattcgaacattctcactagaagaccagcgttcaaaagagaagctc
tcttccataacaattggtccagcaacagaggttattattaatacagttgagctggaggct
tttgcagcaaaggtcgagactggcttggcaaaaagtctgaaaaagattaaagatgaaaag
acgaagacactgcttgcacagaatataggacatgagattgagcagctgaaaaatggccag
aagccggagcagctctataaatatttatctcttctatatcctgatcatacaagtttgata
gactatttaccaaaaaatggtctggtttttattgatgaaattagtagagttcaagagatg
aacgatacattggagaaggaagaggctgattggtatactggcctgctgaatgaaggggaa
atcattcatgacatgaagctttcgcaaaatgtccaagatttgcttcataaggctgtgcag
ccaattgtttatatgtctttattcctgcgccatgttccgaatacgaatccgcagaatatc
attaatgttacgtgtaaacaaatgcaaagcttccacgggcaaatgaatgtgcttaaatct
gagatggatcgttggaagaagaataagtactctgtccttgttttagcgaacaatcaggaa
aggttagagaagctagaacaagtgcttcaagattatgatattcaggcagatattcaaaca
gacaatgacaggattgcgacaggcaaaattcagctgctggagggaagccttcagtctggc
tttgaaatgccattattaaagcttgctgttattactgaggaagagctatttaagactaaa
gtgaaaaaatcatctgcacggaggcaaaagctttctaatgcagaaagaataaagagctat
tctgagttgaaaattggcgattatgttgtgcatgtaaatcacgggattggtaagtactta
ggaattgaaacattgcaaatcaatggtattcataaagattacctccatttacgctatcaa
ggcagcgacaagctgtatgttcctgttgatcagatagacttagtgcaaaaatatgtaggg
tcagagagcaaagagccaaaaatatataaattgggcggcaatgattggaagaaggttaag
aagaaggttgaatcatctgttcaggacattgctgatgatcttattaagctatatgcagag
cgggaagcagccgtcggctatggtttctctccagatggagaaatgcagcgggaatttgaa
tcatcctttgcataccaagagacagaagatcagctacgctctatccatgagatcaaaagg
gatatggaaagagaacgtccaatggatagactgttatgtggagatgttggctatgggaaa
acggaagttgccattcgtgcagccttcaaagcaattgcagatggaaagcaagtcgctttt
cttgtgcctacaaccatcttagcacagcagcattatgagactttgagagagcgattccag
gattatccgattgaaataggattattaagcagatttaggacaagaaagcagcagacagac
actattaaagggttaaaagcaggcacctttgatatcgttgtgggaacacatcgtattctt
tcaaaggatattacttatcgtgatttaggtttgctgatcattgatgaagaacagcgtttt
ggtgttacgcataaagaaaaaatcaagcagctaaaaactaacatagatgttctgacatta
acagcaactcctattccgagaacgctgcatatgtcaatgctgggtgtgcgcgacctttct
gttattgagacaccgccggagaaccgcttcccaatacagacatatgtaatggaatataac
ggagcactagtgcgtgaagcgattgaaagggaattggcacgtaacgggcaaatctacttc
ctgtataaccgggttgaagatattgaacggaaagcagaggaaatatcgatgcttgtccca
gatgcaagggtaacatatgcccacgggcaaatgaccgaaaatgagctggaatcggttatg
ctcagcttcctagagggagagtttgatgtgttggttagcacaaccatcattgagacaggt
gtagatatcccgaatgtaaatacactaattgttcaggatgctgatcgcatgggtctttcc
cagctttaccagctgcgcggacgtgtgggacgctcaaaccgggttgcctatgcatacttt
acttaccgcaaggataaagttctcacagaagtagcagaaaaaaggctgcaggcaatcaag
gaatttactgaacttggttcaggcttcaaaattgccatgagagatttgacgataagagga
gcaggtaatcttctcggagcacagcagcatggatttattgattcagtcggatttgatttg
tattctcaaatgctcaaggatgctattgaagaaagaaaaggtacatttgatgagcagcag
aaacagacaattgatctagatctggatattgatgcttatatcccagacttttatattagt
gatggtcagcagaagattgaaatgtataagaggttcagaggggttgcgtcctttgatgag
ctttcagagcttcaggatgaaatggtcgacagatttggagattatccatctgaggttgct
tatttgttcaaattgacagaaatgaagctgtatggaaaagctgctggagtagagcttatt
aaacaatcgaaagaagaagttctgattctattgtctgagcatggcagcagtttaatggac
ggacagaagattttcgagaagagttcgaagtttggccgtatgattggtttaggaatggat
ggcaaaaaattaaaaatcgtcctccatgtaaaaggaattgaaacagataagtggctaaat
gcttgttatgaaatggtagaggcattgagcacatttaaaaaagagcctcaagaggcaagc
tga
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