Niallia sp. Man26: L8T27_000670
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Entry
L8T27_000670 CDS
T09959
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nil
Niallia sp. Man26
Pathway
nil03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nil00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
L8T27_000670 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nil03021
]
L8T27_000670 (rpoC)
03400 DNA repair and recombination proteins [BR:
nil03400
]
L8T27_000670 (rpoC)
Enzymes [BR:
nil01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
L8T27_000670 (rpoC)
Transcription machinery [BR:
nil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
L8T27_000670 (rpoC)
DNA repair and recombination proteins [BR:
nil03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
L8T27_000670 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
UPO87780
LinkDB
All DBs
Position
1:126839..130438
Genome browser
AA seq
1199 aa
AA seq
DB search
MLDVNNFEFMKIGLASPDKIRSWSFGEVKKPETINYRTLKPEKDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEVIYFASYVVTDPGDTALEKKQLLSEKEFRAYRDKYGVKFQASMGAEAIKKLLS
DIDLNKDVEGLKEELKTAQGQRRTRAIKRLEVLEAFRGSGNEPSWMILDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPSIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPNLKMYQCGLPRE
MALELFKPFVMKELVEKGLAHNIKSAKRKIERVQPEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPTLVEGRAIRLHPLVCTAYNADFDGDQMAVHVPLSSEAQAEARLLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTLEREGAVGEGMIFNDTSEALLAYQNGYVHLHTRVAVR
ASSLNNQTFTEEQNNQLLLTTVGKLVFNEILPESFPYINEPTKANLEEKTPERFFVEQGT
DVRAAIQAMPIIEPFKKKILGNIIAEVFKRFKITETSKMLDRMKDLGFRHSTKAGITVGV
ADIVVLGEKQEIIDEAQGKVDNVMKQFRRGLITEEERYDRVISIWSSAKDVIQAKLMKSL
DKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPAGRIIELPIISSFREGLTVLEYFIST
HGARKGLADTALKTADSGYLTRRLVDVAQDVIVRDDDCGTDRGLLVAALKEGTEIIEPLD
ERLIGRYARRPIRHPETNAVIVAENELITEDLAVEIVAADIKEVWIRSAFTCNTRHGVCK
KCYGRNLATGQEVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIF
EARNPKGQAVITEMAGVIVGINEGRDRQHEIVVQGELETRTYTAPYTARLKVKIDDRVEQ
GQELTEGSIDPKELIKVKNVTAVQEYLLREVQKVYRMQGVEIGDKHVEVMVRQMLRKVRV
VDAGETEVLPGTLLDIHQFTDANAKALREGKLPATGRPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMPRYRHAEPITVDETTEESVPVE
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
ttgttggatgtaaacaattttgaatttatgaaaataggtttggcttcaccggacaaaatc
cgttcatggtcatttggtgaggtaaaaaaacctgaaacaattaactatagaactttaaaa
ccagaaaaagacggcttattctgtgagcgtatttttggtcctacaaaagactgggaatgt
cattgtgggaaatacaagcgtgtaagatataaaggtgtagtctgtgaccgttgtggtgta
gaggtaactcgcgctaaagtacgccgtgagcgtatgggtcatattgaactagcagcacct
gtttctcacatttggtacttcaaaggcatccctagccgtatgggtcttgtattggatatg
tcaccacgtgctttagaagaagttatctactttgcttcatatgtagtgacagacccaggt
gatactgcacttgaaaagaaacagcttctttctgaaaaagaatttcgcgcttaccgcgac
aagtacggtgttaaattccaagcatctatgggtgctgaggcaattaaaaagcttctttca
gacatagatttaaacaaggatgtagaaggcttaaaagaagagttgaaaacagcacaaggc
caacgccgtacacgtgcaattaaaagactggaagttctagaagcattccgcggttcaggc
aatgagccttcttggatgatcctagatgtgcttcctgttattcctccagaattgcgcccg
atggttcaattggatggtggacgttttgcaacatctgaccttaacgatctatatcgccgt
gtaatcaaccgtaataatcgtctgaaaagattattagatttaggtgctccaagcatcatt
gttcaaaacgaaaaacgcatgcttcaagaagcagtagatgcgcttatcgataatggtcgc
cgtggccgtccggttacaggaccaggtaacagaccgcttaaatctctttctcatatgctt
aaagggaaacaaggtcgtttccgtcaaaacttgctgggtaaacgtgttgactactcaggt
cgttctgttatcgtagttggaccgaacttgaaaatgtatcagtgcggacttccaagagag
atggcactagaattattcaagcctttcgttatgaaagaattggttgaaaaaggtttggcg
cataacattaaatctgctaagcgtaaaatcgaaagagtacaaccagaagtatgggatgtc
ttagaagaagttatcagagagcatccagtattgcttaaccgtgcaccgacattgcacaga
cttggtatccaagcgtttgaacctactctagtagaaggtcgcgctatccgtttgcatcca
cttgtttgtacagcatataacgctgacttcgatggtgaccaaatggctgtccatgttcca
ttatcttctgaagcacaagctgaagctagattgcttatgctcgctgctcagaacatcttg
aaccctaaggatggaaaaccggttgttacaccgtcacaggatatggttctaggtaactat
tacttgactcttgaaagagaaggcgctgttggtgaaggtatgatcttcaatgatacgagc
gaggcgctgttagcataccaaaacggttatgttcatttacacactcgtgttgctgtacgt
gcaagctctttgaataaccaaacattcactgaagagcaaaacaatcagctattattaacg
actgtagggaaattagtattcaacgaaattcttcctgaatctttcccatacattaacgaa
ccaacaaaagctaatcttgaagaaaagactccagaaagattcttcgtggagcaaggcaca
gatgtgcgtgcagcgattcaagcaatgccaatcattgagccgttcaagaagaaaatactt
ggaaatattatcgcggaagtattcaagcgattcaaaatcactgaaacttctaagatgctt
gatagaatgaaggatcttggcttcagacactccacaaaagctggtatcacagttggggtt
gcagatatcgtcgttcttggtgaaaaacaagaaattatcgatgaagcacaaggtaaagta
gacaatgttatgaagcaattcagacgtggtctaatcacagaagaagagcgttatgacaga
gtaatttcgatttggagttccgctaaggatgttatccaagcgaaactgatgaaatcattg
gataaacgaaatccaatctttatgatgagtgattccggtgcccgtggtaacgcatctaac
tttacacagttagctggtatgcgcggattgatggccaacccggctggtagaattatcgag
ttacctatcatctcaagtttccgtgaaggattaacagtattggaatacttcatttcaaca
catggtgctcgtaaaggtcttgccgatacagcacttaaaacagcggattctggttacttg
actcgccgtcttgttgacgtagcacaagatgtcattgtccgtgatgatgactgtggtaca
gacagaggcttgcttgttgcagcacttaaagaaggcacagaaatcattgagccgttggat
gagcgtctaattggacgttatgcaagaagaccaatcagacatccagaaacaaatgcagtt
attgtagcagaaaatgagcttatcacagaagatcttgctgttgaaatcgtagctgctgac
attaaagaagtgtggattcgctctgcattcacatgtaacactcgccatggcgtatgtaaa
aaatgttacggacgcaaccttgcaactggccaagaagttgaagttggtgaagcagttggt
attattgctgcccaatctatcggtgagccaggaactcagttgacaatgcgtacattccat
acaggtggggttgctggagacgatatcacacaaggtctacctcgtattcaagagattttt
gaagcgcgtaaccctaaaggtcaggctgttattacagaaatggcaggggttattgtcgga
atcaacgaaggaagagaccgtcagcatgagattgtagttcaaggtgaacttgaaacaaga
acgtatactgcaccatatactgcaagacttaaagtgaagattgatgatagagttgaacaa
ggtcaagaattgactgagggttctatcgatccgaaagaattaattaaagtgaagaacgtt
actgcagtacaagagtatcttcttcgcgaagttcaaaaagtttatcgtatgcaaggggtt
gaaattggagataagcacgttgaggtaatggttcgccaaatgcttcgtaaagtgcgcgta
gttgatgctggtgaaacagaagtattgccaggcacgctattagatattcaccaatttact
gatgcaaacgcaaaagctttaagagaaggtaaactacctgcaactggaagaccagtattg
ctaggtattacaaaagcatctcttgaaactgattcattcctatctgcagcatcattccaa
gaaactacaagagttcttacagatgcagctattaaaggtaaacgtgatgaattgcttgga
ttgaaagagaatgttatcattggtaaacttgttccagcaggtacaggtatgcctagatac
cgtcatgcagaaccaattactgtggacgaaacaacagaagaatctgttccagttgagtaa
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integrated database retrieval system
