Niallia sp. Man26: L8T27_007980
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Entry
L8T27_007980 CDS
T09959
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nil
Niallia sp. Man26
Brite
KEGG Orthology (KO) [BR:
nil00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nil03016
]
L8T27_007980
Enzymes [BR:
nil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
L8T27_007980
Transfer RNA biogenesis [BR:
nil03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
L8T27_007980
Prokaryotic type
tRNA splicing ligases
L8T27_007980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
AcaB
Motif
Other DBs
NCBI-ProteinID:
UPO89075
LinkDB
All DBs
Position
1:1582888..1583850
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AA seq
320 aa
AA seq
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MEVAVINKNKTEVNFDKLDEIIRKHIPSGFATRESSQFHPYSKKIDFRNVVAPFNLKRAK
SSVGTLGGGNHFVELNELDDKIVIVIHSGSRNLGKVIAEHYQNLAYNELLSLQEERQTLI
NELKAEGREREIEEALKSLKSPFIKKDLAYLQGKSFDHYMNDMKIAQHYALLNRKAMAEE
IVSRMGWEIADSFTTIHNYIDMEQMILRKGAISAKKGEKVIIPINMRDGSLIAIGKGNAE
WNESAPHGAGRLMSRTKAKEMVSLTEFQDSMKEVWTTSVNESTLDESPMAYKPMEDIIRH
SVDTIEIMKVIKPLYNFKAN
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggaagttgccgttataaataaaaataaaacagaagttaatttcgataagctcgatgaa
ataatccgcaaacatattccaagcggctttgccacaagggaaagcagtcaattccatccg
tattccaaaaaaattgattttcgtaatgtggtcgcgccttttaacttgaaaagagctaaa
tcatcagttggaactttaggtggaggtaaccattttgttgagttgaacgaattagacgat
aaaattgtgattgtcatccactctggttcaagaaatttaggcaaggtaattgcagagcat
tatcaaaacttagcatataatgagctgttaagtttgcaggaagaacgccaaacgctgatt
aatgaattgaaagcagaaggcagggaaagggaaattgaagaagcgttaaaaagccttaaa
agtcctttcattaaaaaggatcttgcttatcttcaaggaaaaagctttgatcattatatg
aatgatatgaaaatcgcgcagcattatgcacttttgaatcgtaaagcaatggcagaagaa
attgtctcccgtatgggctgggaaatagcggacagctttacaacgattcacaattatatt
gatatggaacaaatgattctcagaaaaggggcaatctctgccaaaaaaggggaaaaagta
atcattccaatcaatatgcgtgatggcagcttaattgcaatcggtaaaggtaatgcagaa
tggaatgaatcggctcctcatggtgcaggcagattaatgtcaagaacgaaagcaaaagag
atggtgtcattgacagaattccaggattcaatgaaggaagtatggacgacttctgttaat
gaaagcacattagatgagagcccgatggcatacaagccaatggaggatattattagacat
agtgttgataccattgaaattatgaaggttattaagcctttgtataattttaaggccaat
taa
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