Niallia sp. Man26: L8T27_011640
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Entry
L8T27_011640 CDS
T09959
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nil
Niallia sp. Man26
Pathway
nil03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nil00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
L8T27_011640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nil03019
]
L8T27_011640
03009 Ribosome biogenesis [BR:
nil03009
]
L8T27_011640
Enzymes [BR:
nil01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
L8T27_011640
Messenger RNA biogenesis [BR:
nil03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
L8T27_011640
Ribosome biogenesis [BR:
nil03009
]
Prokaryotic type
rRNA helicases
L8T27_011640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
AAA_22
AAA_19
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
UPO86266
LinkDB
All DBs
Position
1:complement(2311393..2312847)
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AA seq
484 aa
AA seq
DB search
MTTFSDFNLSSSLEKALSNMGFEEPTPIQAQAIPIGLAGKDMIGQAQTGTGKTTAFGVPL
LEKIEVGKPVQGLVIAPTRELAVQVAEELNRIGAVKGIRTLPIYGGQDINRQIRGLKKKP
EIIAATPGRLIDHIERKTIRLQDTKMIVLDEADEMLNMGFIEDIERILSETPKTRQTLLF
SATMPKRIQSLAERFMVEPELVKIKAKEMTVTNIEQNFIELQERQKFDVLCSLLDIQSPE
LAIVFGRTKKRVDEVVEGLIKRGYSAEGIHGDIPQGKRDQVIRRFKEQTIDIMVATDVAA
RGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGYAVTFVSPRELDHLRIIENVTKK
KMVKNPIPSTTDVLAGNQQATINKIQKTVEENQFAEYKRLAETLLEETDSVTLLASALKL
LTKEPDATPVKLTAVEPLRSKKPKGDRSGGRRRNDRGGRGYDRNRGGGSGGGERRSRNRN
RNRD
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
ttgaccactttttcagattttaatttaagcagcagtttagaaaaagcattatccaatatg
ggctttgaagagccaacaccaatccaggcacaggcgattccaatcggtcttgctggcaag
gatatgattggacaagcacaaacaggtactggtaaaactacagcgttcggtgtgcctctt
ttagaaaaaattgaagtgggtaaaccagttcaaggtcttgtaatcgcacctactagggag
ttggctgtacaggttgcagaagaacttaaccgtatcggtgcagtgaaaggcatccgtaca
ttaccaatttacggtgggcaagacattaaccgccaaattcgcggattgaagaaaaaacca
gaaattattgcagcgactcctggtcgtctaatcgatcatatcgaacgtaaaacaattcgt
ctgcaagatacaaaaatgatcgtcttggacgaagcagatgaaatgttaaacatgggcttc
attgaagatatcgaaagaattctaagtgaaacaccaaaaacacgtcaaacattgcttttc
tctgcaacaatgccaaaaagaattcaatcattagcagaacgcttcatggttgaaccagag
cttgttaaaattaaagcaaaagaaatgacggttacaaatattgagcaaaactttatcgaa
ttacaagagcgccaaaagtttgatgtgttgtgcagtcttcttgacatccaatcaccagaa
cttgcaattgtattcggtagaacaaaaaaacgtgttgatgaagtggttgaaggcttaatc
aagcgtggatattctgcagaaggaattcatggtgatattccgcaaggcaaaagggatcaa
gtaatccgtcgctttaaggaacaaacaattgacatcatggtagcgacagatgtagctgcc
cgcggattggatatcagcggtgtgacacatgtttacaactttgatattccgcaagaccct
gaaagctatgtacaccgtatcggacgtactggccgtgcaggtaaaaaaggttatgctgta
acatttgtatctccaagagaattggatcatcttcgcatcattgaaaatgttacgaagaaa
aaaatggtgaaaaacccgataccttctactacagatgtattggctggaaaccaacaggca
acaattaacaaaatccaaaaaacagttgaagaaaatcaatttgcagaatataagcgtctt
gctgaaacattattggaagaaactgattctgtgacattgcttgcaagtgcattgaagctt
cttacaaaagagccagatgcaacgccagttaaattgactgcagttgaaccgcttcgttct
aagaagccgaaaggtgaccgttctggcggacgtcgtcgtaatgacagaggcggacgtgga
tatgaccgtaaccgtggcggcggcagcggcggcggagaaagaagaagcagaaacagaaac
agaaatagagattaa
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