Niallia sp. Man26: L8T27_011685
Help
Entry
L8T27_011685 CDS
T09959
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nil
Niallia sp. Man26
Pathway
nil03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nil00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
L8T27_011685 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nil03400
]
L8T27_011685 (ligD)
Enzymes [BR:
nil01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
L8T27_011685 (ligD)
DNA repair and recombination proteins [BR:
nil03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
L8T27_011685 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
UPO86275
LinkDB
All DBs
Position
1:2321910..2323118
Genome browser
AA seq
402 aa
AA seq
DB search
MKYTASFTITEYRKADMLFSVGVSDNGNIKNVGQFSEGLTAKELTALSGILEKNKQSEEK
GVMTVTPGICVDLEFTSFANGQIENPVFLQFVFEKSWQECTYEKLLQQIGIEQQITHPDK
PLFPGNELRKIDFIEYLTEVKDVMLPFLHNRLLTVIRFPHGLFGDSFYQKQCPEYAPPFV
QTSWKEDINYIVCNNEQTLMWLGNQLAFEFHIPFETILSDSMPSEIVFDLDPPSRDHFSL
AIKAAQILKTILDGLKLIAFIKISGNKGIQVYIPLPEKTYTYEEARVFTEFIANYMVTME
PKLFTIERLKKNRHNRLYIDYIQHSEGKTIVAPYSIRGNEGGYVACPIHWEELTDSLTPQ
SYSMKSVQKRIKNNINPFADYFEAKKKQSLKAVLQFIQSNNS
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgaaatatactgcttcctttacaataacagagtaccgcaaagctgatatgctcttttca
gtaggtgtttctgacaatggaaacatcaaaaatgtcggacaattcagtgaaggattaaca
gcaaaagagttaaccgccttatcaggcatcttagaaaagaataaacagtctgaagaaaaa
ggcgtaatgacagtcacacctggaatttgtgtagatttagaatttacttcctttgccaat
gggcaaattgaaaatccagtatttctccaatttgtttttgaaaagtcttggcaggaatgc
acctatgaaaaattactacaacaaattggcatagagcaacaaattacccacccagataag
ccattatttccgggtaatgagttgcgcaaaatcgactttattgaatatttaacagaagtg
aaagatgtgatgcttccatttttacataaccgcttgctaactgttattcgtttcccgcat
ggattgtttggcgattccttttaccagaagcaatgtccagagtatgcgcctccctttgtc
cagacaagctggaaggaggatattaattacattgtttgcaataatgagcagacacttatg
tggcttggcaaccagcttgcatttgagttccatattccatttgaaacgattctgtcagat
agcatgccgtctgaaattgtatttgatctcgacccgccatcaagagatcatttttcactt
gccattaaagcggcccaaatattaaagaccattctggacggcttaaaattaatcgccttt
ataaagatatctggcaataaaggtatccaagtttatatcccgcttccagaaaaaacgtac
acatatgaagaggcgagagtctttactgaatttatcgctaattatatggtaactatggaa
ccaaagttatttacgattgagcgcttgaaaaaaaatcgccataaccgcctgtatattgat
tatatccagcatagtgaaggaaaaacgattgttgctccgtattctataagaggaaatgaa
ggcggatatgttgcctgcccaattcattgggaagagctgacagacagcttgacaccgcag
tcatactcaatgaaatccgtacaaaagcggataaaaaacaacataaacccgtttgcagat
tattttgaggcgaaaaaaaagcagtccttaaaagctgtactgcagttcattcagtcaaat
aactcatga
DBGET
integrated database retrieval system
