Niallia sp. Man26: L8T27_013485
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Entry
L8T27_013485 CDS
T09959
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
nil
Niallia sp. Man26
Pathway
nil02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nil00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
L8T27_013485 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nil03021
]
L8T27_013485 (rpoD)
Transcription machinery [BR:
nil03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
L8T27_013485 (rpoD)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Exonuc_VII_L
Motif
Other DBs
NCBI-ProteinID:
UPO86599
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All DBs
Position
1:complement(2653040..2654164)
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AA seq
374 aa
AA seq
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MAEKSARSKEVETELTLDQVKEQLTEVGKKTGVLAYDDIAEKLASFELDSHQMDEFYEVL
GDQGIELVGDGEDEPPNVQELAKGEEEFDLNDLSVPPGVKINDPVRMYLKEIGRVDLLSA
KEEIVLAKRIMEGDEEAKRRLAEANLRLVVSIAKRYVGRGMMFLDLIQEGNMGLIKAVEK
FDYEKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREP
TPEEIGEDMDLTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPSEHAAYE
LLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKL
RHPSRSKRLKDFLE
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaagtcagcccgttcaaaagaggttgaaacggaattgacccttgatcaggta
aaggaacaattaacagaagttggaaagaaaactggggtacttgcatatgatgatattgca
gaaaaactagccagttttgaattagactcccatcaaatggatgagttctatgaggtatta
ggagatcaaggtatagagcttgtaggagatggcgaggatgagccaccgaatgttcaagag
cttgcaaaaggcgaggaagagttcgatcttaatgatttaagtgtgcctcctggcgttaaa
ataaatgaccctgtacgtatgtacttaaaggaaattggtcgtgtggacctgctttccgct
aaagaagagattgtattggcaaagcgcattatggaaggcgacgaagaggcaaaacgccgt
cttgctgaagcgaacttaagacttgtagtctccattgcaaaacgttatgttggccgtgga
atgatgttccttgatttaattcaggaaggaaatatgggtcttattaaagcggttgagaaa
ttcgactatgaaaaaggatttaaattcagtacgtatgcgacatggtggattcgccaggct
attacgagagcaattgcggaccaagcccgcacaatccgtattcctgttcatatggttgaa
acaatcaataaattgattcgcgttcagcgtcagttactgcaggatttaggccgcgaaccg
actcctgaagaaattggagaagacatggatctgactccggataaagtaagagaaatctta
aagattgcgcaagagcctgtttccttggaaacgccgattggggaagaagatgattcccat
ttaggtgatttcattgaagatcaggatgcaacatctccttctgaacatgcagcttatgag
cttctaaaagagcagcttgaagatgttctggatactttgacagaccgtgaagaaaatgtt
ttaagacttcgtttcggtttagatgacggacgtacaagaacacttgaagaagtcggcaaa
gtatttggtgtaacgcgtgagcgtattcgccaaatcgaagcaaaagcactaagaaagctt
agacatccgagccgcagcaaaagactaaaagatttcttagaataa
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