Candidatus Nitrotoga sp. AM1P: W01_02810
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Entry
W01_02810 CDS
T06613
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
nim
Candidatus Nitrotoga sp. AM1P
Brite
KEGG Orthology (KO) [BR:
nim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nim03009
]
W01_02810 (rlmD)
Enzymes [BR:
nim01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
W01_02810 (rlmD)
Ribosome biogenesis [BR:
nim03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
W01_02810 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_23
Methyltransf_11
MTS
Methyltransf_12
Methyltr_RsmB-F
RrnaAD
Methyltransf_32
Cons_hypoth95
Methyltrans_SAM
Motif
Other DBs
NCBI-ProteinID:
BBJ22354
UniProt:
A0A455WZ54
LinkDB
All DBs
Position
complement(316540..317865)
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AA seq
441 aa
AA seq
DB search
MTDKSVHANSVVVESLDYEGRGIAHTNGKVIFIEGALTGERVTYSSYRKKTSFEIAQLGQ
VIKPTFMRVQPKCKHFGVCGGCSMQHMDARAQVAAKQRILEDNLWHIGKVKAQTILPPIY
GQPWSYRQRARLSVRHVLKKGKTLVGFREKRGGYVADMQHCEILTPKIAKLLPLLGQLNE
SFTTRDMLPQIEVAVGEHVDVLVLRILQALSPADEEAIKEFADTHAVQFWLQTKGPETAV
PFYPLDAPPLTYSLPEFGIIMPFAPTEFTQVNADMNRVMVSRAMRLLNPQPNERIADLFC
GLGNFTLPIARSGAQVVGIEGSAALVQRAVQNAAFNGLASNTQFSVMNLFEIDEAALVQL
GHFDKMLIDPPRDGAFELVKALGADAPGRIVYVSCNPATLARDAKVLVHQKSYVLKAAGV
MNMFPHTSHVESIALFEKTQA
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgactgataaatccgtacacgcaaacagcgttgttgttgaatcgcttgactacgaaggt
cgcggcattgcgcatacaaatggtaaagtaatttttatcgaaggtgcactaacgggtgag
cgcgtcacctattcgtcatatcgtaaaaaaaccagctttgagatagcacaactcggccaa
gttattaagccaactttcatgcgcgtccagccgaaatgtaagcattttggcgtgtgcgga
gggtgttccatgcagcatatggatgcacgcgcacaggttgccgccaagcagcgcattctg
gaagacaacttgtggcatatcggcaaggtcaaggcccagaccattttgccgccgatctat
gggcagccgtggagctaccgacagcgggcgcggctttcggtgcgtcatgtattgaagaag
ggcaaaacactggtaggctttcgcgaaaagcgtggcggctatgtggcggatatgcagcat
tgtgaaatcctgacacctaaaattgccaagctattgccactgttgggacagttgaacgaa
agctttacaactcgcgatatgttgccgcaaatcgaagtggcagttggcgagcatgtggat
gtgctggtactgcgcattttacaagcactttcgccagctgacgaagaggcaattaaagag
ttcgccgatacccatgcggtacagttttggctgcaaacaaaagggccggagaccgcagtg
ccgttttacccgttggatgcaccgccgttgacatacagcctgccagagttcgggattatc
atgccgtttgcaccgactgagtttacccaagtcaatgcggatatgaatcgcgtcatggta
agtcgcgccatgcgtttactcaatcctcaaccgaatgaacgcatcgctgatttattctgc
ggactgggcaacttcacgctgcctattgcgcgcagtggtgctcaagtagtgggaatcgaa
ggcagcgcggccctggtgcagcgtgccgtgcagaatgccgcgtttaatggcttggcgagt
aacacccaattcagcgtgatgaatttgtttgagatagacgaagcagcattggtgcagtta
ggccatttcgacaaaatgctaattgacccgccacgcgacggcgcatttgaactggtcaag
gcgctaggtgctgatgcaccaggtcgcatcgtgtatgtctcatgcaaccccgcaacgctg
gcgcgtgatgctaaggtgttagtgcatcaaaaaagttatgtattaaaagctgcaggcgta
atgaatatgtttccgcacacctctcatgtcgagtccatcgcactgtttgagaagacgcag
gcatag
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