Candidatus Nitrotoga sp. AM1P: W01_04560
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Entry
W01_04560 CDS
T06613
Symbol
hup_1
Name
(GenBank) DNA-binding protein HU-beta
KO
K03530
DNA-binding protein HU-beta
Organism
nim
Candidatus Nitrotoga sp. AM1P
Brite
KEGG Orthology (KO) [BR:
nim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nim03032
]
W01_04560 (hup_1)
03036 Chromosome and associated proteins [BR:
nim03036
]
W01_04560 (hup_1)
03400 DNA repair and recombination proteins [BR:
nim03400
]
W01_04560 (hup_1)
DNA replication proteins [BR:
nim03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
W01_04560 (hup_1)
Chromosome and associated proteins [BR:
nim03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
W01_04560 (hup_1)
DNA repair and recombination proteins [BR:
nim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
W01_04560 (hup_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_1
HU-CCDC81_euk_2
VWA_3
Motif
Other DBs
NCBI-ProteinID:
BBJ22529
UniProt:
A0A455X2A6
LinkDB
All DBs
Position
543711..544004
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AA seq
97 aa
AA seq
DB search
MNKAELIDAVAKSTKNSKVNVEEILNALMAAIQASLVKGDNVQLIGFGTFAVEQRAARIG
RNPATGKELKIPAKKVAKFKVGSKLKDAVADVKAKKK
NT seq
294 nt
NT seq
+upstream
nt +downstream
nt
atgaataaagcggagttgattgatgcagtagcgaagtccacaaaaaattccaaggtcaat
gtcgaggaaatactgaatgcgttgatggctgctatacaagcgtcattggtaaaaggcgat
aacgtgcagctgattggttttggcacctttgctgtcgaacagcgtgctgctcggataggt
cgaaatccagctaccggaaaagagctgaaaataccggccaagaaagttgcgaaatttaaa
gtcggcagcaagttgaaagacgcagttgctgacgtcaaagctaaaaagaagtaa
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