Candidatus Nitrotoga sp. AM1P: W01_15650
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Entry
W01_15650 CDS
T06613
Symbol
mrdA
Name
(GenBank) penicillin-binding protein
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
nim
Candidatus Nitrotoga sp. AM1P
Pathway
nim00550
Peptidoglycan biosynthesis
nim01100
Metabolic pathways
nim01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
nim00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
W01_15650 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
W01_15650 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
nim01011
]
W01_15650 (mrdA)
Enzymes [BR:
nim01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
W01_15650 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
nim01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
W01_15650 (mrdA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
bDLD3
Motif
Other DBs
NCBI-ProteinID:
BBJ23638
UniProt:
A0A455X424
LinkDB
All DBs
Position
complement(1799013..1800914)
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AA seq
633 aa
AA seq
DB search
MKRHIEFKDTQREIHYFRLRLALSLGFVLLLLLLLLARFVYLQAIQQSHYQTLAENNRIS
IVPIAPSRGLILDRNGVVLAHNYSAYTLEITLSKVVDLKTTIDELAKLIDIQPGDRKRFK
RLLADNRKFESLPIRNRLTDDEVARFSTQRYRFPGVEIKARLFREYPYHEQISHLVGYIG
RINESEIAQLEEDEIAANYRGSDYIGKTGIEQSYEGELHGKTGFQQVEVDAGGREVRVLS
RTPPVSGNNLILTIDAKLQGIAEQAFGNYRGALVAIDPRNGEVLAFVSKPGYDPNLFIDG
IDEQSWNELNNSPDVPLNNRALRGQYSPGSTIKPFMALAGLYYNKRTPGYTISDPGYFSL
PGSRHRYRDWKKDGHGSVDLFKSIVVSCDTYYYGLATELGIDNIYSFFSEFGFGKKTGID
MEGEVSGLMPSQEWKQKRYKQKWYTGDTVSVGIGQGYNLVTPLQLAYATAVLANDGVAYR
PHLLKEVQSSRTSEKRTLGTNPESNLNLNSEHVALVKSAMVAVTQPGGTAAKAGAGASYS
FAGKTGTAQVIGIKQGEKYIESKIQERHRDHAWFMAFAPSDQPKIALAVLVENGGHGSST
AAPIARKVLDYFLLGKVPHPLLTVDEAEGVEHD
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaagcgtcacattgagtttaaagatactcaacgagaaattcattattttcggctgcgt
ctggcgttaagtttagggtttgtgttacttctgctattacttctgctggcacgttttgtt
tatttgcaggcgatacaacagagccactatcaaactttggcagagaataatcgcatttcc
atcgtgcccattgcgcccagtcgcggcctgatactcgaccgcaatggcgtcgttctggca
cataattattctgcctatactctagagataaccttaagtaaggtggtcgatctgaagacg
acaattgatgaacttgcaaagttaattgatattcaacccggagatcgcaaacgctttaag
agattgctggccgataaccgtaaattcgagagcctgccaatacgcaaccgtttaacagat
gatgaagtggcgcgcttttctacgcagcgctatcgttttcctggcgtagaaattaaggcg
cgtttgttccgtgagtatccttatcacgagcaaatttctcacctggtcggttatatcggt
cgtattaatgaaagcgaaattgcgcagctggaggaggatgaaatagctgctaattatcgt
ggttccgattacatcggtaagactggcatcgagcaaagttacgagggcgaattacatggt
aaaaccggtttccaacaggtggaagtggatgcgggtggacgcgaggtgcgagtgctgtcg
cgcacgccacccgtatcgggcaacaatttaatactaacgatagatgccaaattgcaggga
attgccgagcaggcgtttggcaattatcggggtgcgttagtggcgatagacccaagaaat
ggggaggtattagcctttgtcagcaagccgggctacgatccaaacctgttcattgatggt
attgatgaacagagttggaatgagcttaacaattcgcccgatgtgcccctcaataatcgc
gcattgcgaggccagtattcacctggctccaccatcaagccattcatggcattagctggg
ctgtattacaacaaacgcacacccggctacactatcagtgatccaggttatttcagtctg
cccggcagtcgtcaccgataccgagattggaaaaaggatgggcatggcagcgtagatttg
tttaaatccatcgtggtgtcttgtgatacttattattatggactggccaccgaattgggt
atagacaacatatatagctttttttcggagtttggattcggtaagaaaactggtattgat
atggaaggtgaggtctccggcttgatgccgtcacaggagtggaagcagaaacgctacaag
caaaaatggtataccggtgatacggtttcggttggtatcggtcagggctacaatttagtt
acgccgttgcaattggcttatgccactgcggtactggccaacgatggagtagcctaccgc
ccccatctgttgaaggaggtgcaaagttcgcgcactagcgaaaaacgcacattggggacg
aatccagaatctaatctcaacctcaattcggagcatgtcgcgttggtgaaaagcgctatg
gtggcggtgacgcagcctggaggcaccgccgcgaaggccggtgcgggcgcatcctattcc
ttcgctggcaaaaccggcacggcgcaggtaatcggcattaaacagggcgagaaatacatc
gagagcaagattcaggagcggcatcgcgaccacgcttggtttatggcctttgcaccttcc
gatcagcccaagatcgcgctagcagtgcttgttgagaacggggggcacggtagctctacc
gctgcgccgattgctcgtaaggtgttggattatttcctgctgggtaaggtgcctcatccc
ttgcttacagtggatgaagccgaaggagtggaacatgattaa
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