Candidatus Nitrotoga sp. AM1P: W01_18830
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Entry
W01_18830 CDS
T06613
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
nim
Candidatus Nitrotoga sp. AM1P
Pathway
nim02020
Two-component system
nim02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nim00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
W01_18830 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
W01_18830 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nim03021
]
W01_18830 (rpoN)
Transcription machinery [BR:
nim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
W01_18830 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_38
Motif
Other DBs
NCBI-ProteinID:
BBJ23956
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All DBs
Position
2151632..2153059
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AA seq
475 aa
AA seq
DB search
MKPTLQLRQSQQLTLTPQLQQAIRLLQLSTLEVNQEVARLLDENPLLERADEDAMQPYAH
GDAASSAVVDNTEVKDEMPQQTDEDWVKEDWNEPSFSAASGPDDEKEARAEVAADTPSLR
EHLIWQLNMSQHDVRDRKIIGLLIDALDGNGYLAQPLEEIVEMLPEQLDITLDDLETALV
QLQHLDQPGIAARTLSECLTLQLKALPEDTPCRDLALRLVSQYLNLLGAHDFTKLKKVLR
CDDDALRTVQSLITHLQPRPGAEFEQRAADYVVPDVVVEFRHGNWHVRLNQGAMPRLRVN
QMYANILQQGNEKNVQQLAGQLQEARWFIKNLQQRFDTILRVSQTIVDRQRNFLEHGDTA
MCPLVLREIAEQLDLHESTISRVTTQKFMLTPRGIYELKYFFCSGIATESGGTCSSTAIR
ALIKQLVNQEDARHPLTDSRMSEILAQQGILVARRTVAKYRELLNILPVNLRKSL
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgaaacccacattacagcttaggcaatcccagcaactgacgcttaccccccagttacag
caagccatacgcctgttgcaactatccactctggaagtcaatcaggaagtagcacgtttg
ctggatgaaaatccattgttagaacgtgcagatgaagatgcgatgcagccctatgcgcat
ggagatgctgcttctagcgctgttgtagataatactgaagtaaaagatgaaatgccgcaa
cagaccgatgaagactgggtaaaagaagactggaatgaaccttctttttccgcagccagc
gggccggatgatgaaaaagaagctcgtgcggaagtcgcggcagataccccaagcctgcgt
gagcacctcatctggcaactaaatatgagtcagcatgatgtgcgcgaccgaaaaattatc
ggtttgttgatcgatgcattggacggcaatggttatctggcgcagccgctggaagaaatt
gtcgaaatgctaccagaacaacttgatattactttggatgacttggaaactgcactggtg
caattacagcacctggatcagcccggcatagctgcccgtaccttaagcgaatgtctcacg
ctccaacttaaagcgctcccggaagatactccatgccgggatctggcgctacgcttggtg
tcgcaatacctcaacctgctgggtgcgcacgattttaccaagctgaaaaaagtccttcgc
tgtgacgatgacgcattgcgcaccgtacaatcgctcattactcatctgcaaccaagacct
ggcgctgaatttgaacagcgagccgcagactatgtcgtacctgatgtggtggtagaattc
cgccacggtaactggcatgtacggctaaatcagggcgctatgccgcgcctgcgtgttaat
caaatgtatgccaatatcttgcaacagggtaatgaaaaaaacgtacagcagctggctggt
caattgcaggaagcgcgctggtttatcaaaaatttgcaacagcgtttcgatactattttg
cgtgtatcgcagacaattgttgatcgtcaacgcaattttttagagcatggtgatacagcg
atgtgcccgctggtactgcgcgaaattgcagaacagcttgatctgcatgaatccaccatt
tcccgtgtgactacacaaaaattcatgcttaccccgcgcggtatttatgaactcaagtat
tttttctgcagtggaatcgcgaccgaaagtggcggtacgtgttcctccacggcaatccgc
gcactcatcaagcagcttgtcaaccaggaagacgcacgtcaccctctaaccgacagccgc
atgtctgaaatcctggcacagcagggcatattggttgcccggcgtaccgtggcaaaatac
cgggaattgctgaatatcctcccagttaatcttcgtaaatcactctaa
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