Candidatus Nitrotoga sp. AM1P: W01_20480
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Entry
W01_20480 CDS
T06613
Symbol
rhsD
Name
(GenBank) type IV secretion protein Rhs
Organism
nim
Candidatus Nitrotoga sp. AM1P
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
DUF4595
TEN_YD-shell
RHS
Motif
Other DBs
NCBI-ProteinID:
BBJ24121
UniProt:
A0A455XEX5
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Position
2317286..2321008
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AA seq
1240 aa
AA seq
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MDGGSGDSSGYDIFAGDPINTAIGNVVESARDYRGSGPFPVNFSRTYNSLPSLVPGFVNS
LGGNWRGTYDANIVTHEGDVYVYRPDGKAVKFTLVNGAYASASDVVATLTTVQASGKPAG
WIYTTAVHTVETYDVNGHLKSIANRNGLVQTLAYDGNGSLTSVTDPFRRVLNFTYDASKR
LVTLTGPDLATIRYAYDANNNLTSVTYPDSTTTGYQYQNSAFPSLLTGRIDAKGVVVSTW
TYDNQGRAIGNQLANGVAAVTVMYNQDSTDVIDVRGVTRTRQFKRIGSTQKLVSMTVACR
DCDAGLLRTVSHDSNGFATGNTDFSGFMAQNTRDSRGLALTETVAAGTPLARTIKYTWHP
IFPNLTSIVLPNNQSSQFEYDDKGNLTKRTMTADGVSRVSTYQYNAAGQLIHVTNPGADG
KNVTTLTYDKQGNLASVTNALNQSIHFTQYDANGRLLSLTDPRGRSTTFTYDANGRRTSI
TTGALVSKFTYNANGQRASVSLADGSILDYAYDDAHRLTDVIDTRDTNLHLTRDAAGNVT
QRTMTVASGAVVRSRAFAYDQRGRLLQVTGNSGQKTVYTYDRTGHLLSVSDALSRTNQTQ
YDELQRLIQSIDAKGNITAYDYDVNDNLVGVTSPRGVATQYQRNGFGQVIKLISPDTGQT
SYQYDTAGKLIAATDARGKSARMRYDVLGRPTQINLAEDQQVSLTYDQGHYGIGRLTAVN
NPTSGNSYQYDVNGRVALQRQTIGNVSEEVKYDHTEIGQLTSMHYPSGMAIQYAYAADGK
TVSLNLNGTSLLGQIKYQADGQIGQWTWGNTRVTSRSFDIDGRLTAFSKAGSSATIAYDN
ADRIVNMADSSGPSRTQGFAYDNNDALTNYTANATTQRYQYDEDGNRTAQGNGGAIANYA
YASGSNRLLKLTGSQKATLQYDAAGNIVADGANRYTYDTLGRLVQVSNVAGSTRYLFDPL
GQRVAKLNGRGKDGEDDGGDNEDSKTATTYFTYDTVGHLIGEYNRQRSQSTEYVWLDNAP
VAVLKKNGNAPAQLYYVHTDHLGTPRQVTNSATNAVVWEWFGEPFGTSVPDEDPGHTGKK
FTLNLRYAGQYYDKESSLFHNGFRDYNPKIGRYVQSDPIGLKGGINTYTYVGGNPLSRVD
PMGLDWFRPADHSYVVGRKDSIVEPGKGLGKFIDDNVPAGHTFGSLHDAGVNAYLNEGYP
DWLVNIPTMPSYYWEALVNETADSIMKLLGKKPGSDSCSK
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atggatgggggcagtggcgactcctcgggttacgatatttttgcgggcgatccaatcaac
actgccatcggcaatgttgttgaatcagcacgcgactatcgaggcagcggaccgttccca
gtcaatttttcccgaacctataatagcttgccctcactggttcccggctttgtcaatagt
ttgggggggaactggcgcggcacctacgatgccaacatcgttacccatgagggcgatgtc
tatgtgtatcgtcccgatggcaaggcagttaaattcaccctggtcaatggcgcttatgcg
tcggcaagcgacgtcgtcgccacactgacgaccgtacaggcaagcgggaagccagcggga
tggatttatacgacagcagtccacacagtcgaaacatatgatgtcaatggccatttgaag
tccattgcaaacagaaacggcttggtccaaacgttggcgtacgacggcaatggttcgctc
accagcgtaactgatcctttccgacgcgtgctgaactttacctatgatgcctcaaagcgg
ctggtgacattgaccggaccggatctcgccacgattcgatatgcttacgatgcgaataac
aacctgacctcagtcacctatccagacagcacgacgaccggataccaatatcaaaacagc
gcattcccaagcctgctgaccggtcgaattgatgcgaaaggtgtggtcgtctcgacctgg
acctatgacaatcaaggacgcgcgattggcaaccagctggcaaacggcgtagcggctgtc
actgtcatgtacaaccaggacagtaccgacgttatcgatgtccgcggcgtgacccgcacg
cgccagtttaaacgtattggtagcacccagaaactcgtcagcatgacagtagcgtgcaga
gactgcgatgccggactattgcgcaccgtcagccatgatagcaacggatttgccacgggc
aatactgatttcagtggttttatggcccagaacacgcgcgattcgcgcggcttggcgttg
accgagacagtggcagcgggaacgccactggcgcgcaccatcaagtacacctggcatccc
atatttccaaatctgaccagcattgttttgccgaacaaccagagctctcagtttgaatat
gacgacaaaggtaatctcaccaagcggacgatgacggccgatggcgtaagtagagtttca
acgtaccaatataacgctgccggacaattgatacacgtaacaaaccccggcgccgatggc
aagaatgtcacgacattgacctacgataagcagggcaatctcgccagcgtcacgaatgcg
ttaaatcaatccatacatttcacccaatacgatgccaatggccgtttgctcagcctgacc
gacccgcgtggccgttcgacaaccttcacatacgatgccaatggccgccggacgagcatc
acgaccggcgcgttggtcagcaaatttacctacaacgccaacggccaacgcgccagcgtc
tcgctagctgacggcagcatacttgactatgcttatgacgacgcgcaccgtttgacggat
gtaattgatacacgagacaccaacctgcatttaacccgcgatgcagccggaaacgtaacg
caacgcacgatgactgttgccagcggcgccgtggtccgcagccgtgcgtttgcatacgac
cagcgcggacgtctgctgcaagtgacaggaaacagtgggcagaaaaccgtctacacctac
gataggacagggcacttgctttcggtatccgatgccctcagccgcaccaatcaaacccag
tacgatgagttgcagcgcttgattcagtcaatcgatgcgaagggtaatatcaccgcctat
gactacgacgtcaatgataacttggtcggcgtgacctcacccagaggggtagcgacgcaa
taccagcggaatggctttggacaagtaataaagttgatcagccccgatactggccagacg
tcatatcaatatgatacggcaggcaaattgattgcagccaccgacgcccgtggcaagagc
gcccgtatgcgctacgatgtgctgggccgaccgacgcaaatcaacttggcggaagatcag
caggtgtcgcttacgtatgaccaaggccattacggcatcggtcgattgaccgctgtcaac
aatcccaccagcggcaattcctatcagtacgatgtaaatggccgcgtcgcgttacaaaga
caaaccatcggtaacgtttccgaagaggtcaaatatgaccatacggagatcggccagctg
acctcaatgcactatcccagtggcatggcaatacagtatgcgtatgccgccgatggcaag
actgtcagcctcaaccttaacggcacgtcgttattgggccagatcaaataccaagctgac
ggtcaaatcggacaatggacgtggggtaatacacgggtcacatcccgctccttcgatatt
gatggtcgtcttaccgccttcagtaaggccggcagcagtgccacgattgcgtatgacaac
gccgaccgcatcgtcaacatggccgacagcagcggcccgagccggacgcaagggttcgct
tacgataacaacgatgcgctgaccaattacacagccaatgccacgacccaacgctaccaa
tatgatgaggacggcaatcgcacggcgcaaggtaacggtggtgcaattgccaattatgcg
tatgccagtggcagtaaccggttgttgaaactgacgggtagtcaaaaagctaccttgcaa
tacgatgcagccggcaatatcgtagcagatggcgctaaccgctatacctacgatacactc
ggacgcctggtgcaggtaagcaatgtagcgggcagcacgcgttacctgttcgatccgctg
ggtcagcgtgttgcgaaactaaatggcagaggcaaggatggtgaagacgacggcggagat
aacgaagacagcaagaccgccacgacatacttcacctacgatacagtcggccacctgatt
ggagaatacaatcgtcagcgtagccaatcgaccgaatacgtatggctggacaatgcaccg
gttgcagtgctgaagaaaaacgggaacgctccggctcagctgtactatgtgcataccgat
catctgggcaccccacgacaagtcaccaatagcgcgactaatgctgtggtttgggaatgg
tttggtgagccgttcggcaccagtgtgccggatgaggatccaggtcacaccggcaagaaa
ttcaccctgaacttgcgctacgcgggtcagtactatgacaaggaatcgagcttgttccac
aacggattcagagattacaatccaaaaatcgggcggtatgtgcaaagtgatccgattggg
ttgaagggtgggattaatacctacacctatgttggtgggaatccgctgtctagagtggat
ccaatggggttggattggtttaggccggcagatcactcttacgttgttggacgaaaggat
tcgattgtcgagcctggcaaagggcttggaaagtttatcgatgataatgtgcctgcaggt
cacacttttggatcactgcatgatgccggggtaaatgcctatttgaatgaagggtacccg
gattggctcgtaaatattccaacaatgcctagctattactgggaggcgctcgtgaatgag
acggcggacagcatcatgaaactcttaggtaagaagcctgggagcgattcatgttccaag
taa
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