Candidatus Nitrotoga sp. AM1P: W01_20900
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Entry
W01_20900 CDS
T06613
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nim
Candidatus Nitrotoga sp. AM1P
Pathway
nim03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nim00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
W01_20900 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nim03021
]
W01_20900 (rpoC)
03400 DNA repair and recombination proteins [BR:
nim03400
]
W01_20900 (rpoC)
Enzymes [BR:
nim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
W01_20900 (rpoC)
Transcription machinery [BR:
nim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
W01_20900 (rpoC)
DNA repair and recombination proteins [BR:
nim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
W01_20900 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
BBJ24163
UniProt:
A0A455XDT3
LinkDB
All DBs
Position
2374990..2379213
Genome browser
AA seq
1407 aa
AA seq
DB search
MKALLDLFRQVTQKEEFDAIKIGLASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPTKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVTDPGMSTLERAQLLSEDDYLAKLEEYGDEFSAVM
GAEGIRALLHALDVPAEVEKLRADLEATSSETKIKKYAKRLKILEAFLVSGIKPEWMIML
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
ESIDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPQ
LKLHQCGLPKKMALELFKPFIFHKLEILGLATTIKAGKRMVEAEEPVVWDILEDVIREHP
VLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQMEC
RTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTREKIGALGEGALFADVSEALRAYESG
HVDLHAKVVVRIKEIGLDDNNERQEKRTRYETTVGRAILSDILPVGLPFSLVNKALKKKE
ISRLINTSFSRCGLRNTVIMADKLMTTGFTYATRAGISICLDDMLVPPQKNELIDAAGKE
VREIDVQYTSGLVTQGERYNKVVDIWGRTGDLVAKAMMDQLGSEPVIDRASGKQLADKKG
KVVMQESFNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNMLQ
YFISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVAEEDCGTSDGAALKALVEGGEV
IEALRERILGRVASKDIVNPESSETLYEAGTLLDEDMVENIESLGVDEVHVRTPLTCETR
YGLCVKCYGRDLGRGGPVTVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTVVANQVE
GKSNGQVKYSANMRTVSNTRGELVVVARSGEIMVTDDHGRERERHKVPYGAMLAVREGSL
VRAGEVLATWDPHTRPIITEYAGRARFENVKEGVTVTREIDEVTGLSTLVVDPKLAGTQG
KGVLRPLVRLLDEEGHEIKIAGTELPISVTFQTGCIITVEDGQHVGVGEVLARIPQESSK
TRDITGGLPRVAELFEARSPKNAGMLAEVTGTASFGKDTKGKQRLVITDMQGVAHEFLIT
KDKHVLVHDGQMVTQGEMIVDGPRDPHDILRLLGVAALARYIADEVQDVYRLQGVKINDR
HIEVIVRQMLRRVQIVDEGDTKFIPKEQVERADLLQENERVEKEGKQPATYEYMLLGITK
ASLSTDSFISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAYHAARRK
QRLGLGMAATVLSEGEQAVETQDNQLA
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcattgctggatttgttcaggcaagttacgcagaaggaggagttcgacgcgatc
aagatcgggttggcctcaccggagaaaattcgttcttggtcctacggcgaagtaaaaaag
ccggaaaccattaactaccgaactttcaagccggagcgggatggtttgttttgcgccaag
atttttggtccaaccaaggattatgagtgcctatgcggtaagtataaacgcttgaaacat
cgtggggtgatctgcgagaaatgcggtgtggaagtaacgctatctaaagtgcgtcgcgaa
cgtatggggcatatcgaactggcaagtccggtggcgcatatttggttcttaaagtcattg
ccgtcgcgtttgggaatggtgctggacatgacgttacgcgacatagagcgcgtactttat
tttgaagcttacgtcgtgaccgatcctgggatgtccacgctcgaacgcgctcaattgctt
tctgaggatgattatttagccaagctggaagagtatggagatgagttttccgcagtaatg
ggggcggagggcatacgcgcgctcttgcacgcgttggatgtgccagcagaggtggagaag
ctgcgtgctgatcttgaagcgaccagctccgaaaccaaaatcaaaaaatatgcgaaacga
ttgaaaatccttgaggcatttttggtttcgggcatcaagcccgagtggatgattatgttg
gtgctgcccgtgttgccgccagaattacgtcccttagtgccgttggatggtggtcgcttt
gcgacttctgatttgaatgatttgtatcgtcgtgtaattaaccggaataatcgtttgaaa
cgccttttggagttgaaggcaccggaaattattgtgcgcaacgaaaagcgtatgttgcag
gaatcaattgattcgctgctggataatggccgtcgcggcaaggcaatgacaggtgctaac
aagcgtccactgaagtcgttggcggacatgattaaaggtaaaggcggtcgcttccgccag
aatttgctgggcaagcgcgtagattattctggtcgttccgtaattgttgtggggccgcag
ctgaaattgcatcagtgcggcttgcccaagaaaatggcgctggagctatttaagccattc
atttttcataaactggaaattctcgggctggccacaaccattaaggcgggcaagcgtatg
gtggaagcggaagagccagttgtgtgggatattctggaagatgtcattcgtgagcatccg
gtactgttgaaccgagcgcctacgttgcatcgtctcggtattcaggcgttcgagccgata
ctgatcgaaggcaaagcaattcagttgcatccattagtttgtacagctttcaacgccgat
ttcgacggtgaccagatggccgtgcatgtgccgttgtcactggaagcgcagatggaatgc
cgtaccttaatgctggcctctaataacgttttgtcgcctgccaatggcgagcctatcatt
gttccgtcgcaggatatcgtgctggggctgtactatatgacgcgcgaaaaaatcggtgcg
ctgggcgagggcgcgttgtttgctgacgtgtctgaagcgctacgagcctacgaatctggc
catgtagatctgcatgccaaggtagtcgtgcgtattaaagaaataggcttggatgataac
aatgagcgtcaggaaaagcgtacccgctatgaaactaccgtgggacgtgctattttgtca
gatattttgccagtcggtttgccgttcagtttggttaataaagcattaaagaaaaaagag
atttctcgtctgattaacaccagcttcagtcgttgtggtttgcgcaacaccgtgatcatg
gctgacaagttgatgacaactggctttacttatgcgacccgcgccggcatttcaatttgc
ctggatgacatgctggtgccaccgcaaaaaaatgagttaattgacgcggcaggaaaagag
gtgcgtgagattgacgtgcaatacacttctggtttggtgacccagggtgaacgttacaat
aaggtagtggatatctggggtcgtactggtgatctggtggccaaagctatgatggatcag
ctaggtagcgagccagtgattgaccgtgccagcggcaaacagcttgctgataagaagggc
aaagtagtgatgcaggagtcttttaattccatctatatgatggcagactctggcgcgcgc
ggttctgcggctcagattcgccaattagcaggtatgcggggtctgatggccaagccagat
ggttctatcattgaaaccccgattaccgctaattttcgcgaggggctgaatatgttgcaa
tattttatctccactcatggtgcgcgaaaaggcttggctgataccgcattgaagaccgcg
aactctgggtacctgacgcgtcgtttggtagatgtgacccaagatctagtggtggctgag
gaagattgtggtaccagcgatggtgccgcgttgaaggcattggttgaaggtggtgaggtg
atagaagcattgcgtgagcgcatactaggtcgcgttgccagcaaggatatcgtcaaccca
gaaagcagcgaaactctatatgaggcaggcactcttctggacgaagatatggtggaaaac
attgagtcgctgggtgttgatgaagtacatgtgcggacgcccctcacatgtgaaacccgt
tatggtttgtgcgtcaaatgttatggtcgtgacttaggtcgaggtggtcccgtgacggta
ggcgaagcagttggcgtaattgctgcgcaatccattggggagccaggtactcaattgacc
atgcgcaccttccatattggtggtgccgcatcgcgtaccgtggtggctaatcaggtcgag
ggtaagtctaatggtcaggtgaaatacagcgcgaacatgcgtaccgtcagcaatacgcga
ggagagttagtggtggtagcgcgtagtggcgaaataatggttaccgatgatcatgggcgc
gagcgcgagcgccacaaggtgccatacggcgcgatgttggccgtacgtgagggtagtttg
gttcgcgcaggtgaagtgttggctacatgggatccccatacccgtcctattattaccgaa
tatgctggtcgggcgcgatttgaaaatgtaaaagagggcgttaccgttactcgagagatt
gatgaagtaaccggattgtccactcttgtggtggatcctaagcttgctggtacgcaaggt
aagggtgtgctgcggccattggtacgtttgctcgacgaggaggggcacgagattaagatt
gctggcaccgaattaccaatttcggtgacctttcagacgggttgtatcatcaccgtagaa
gatggccagcatgttggcgtgggtgaggtgctggcacgtattccgcaagaaagtagtaaa
acacgtgacattactggaggacttccgcgagtggcggaactgtttgaagctcgttcgcca
aagaatgctggtatgttagcggaagttaccggaacggcatcgttcggtaaggatactaag
ggtaagcaacgtttggttatcaccgatatgcaaggtgtggcgcatgagtttctgattacc
aaagacaagcatgtgctagtacacgatggacaaatggtgacccaaggcgaaatgattgtg
gatggtccgcgcgatccgcatgacattttgcgcttgctgggtgtggcagcactggcgcgt
tatattgccgatgaagtgcaggatgtgtaccgcctgcagggtgttaagattaacgacagg
catattgaagtgatagtgcgccagatgttgcgccgagtgcagattgtagatgaaggtgat
accaagtttattcccaaagagcaggtggagcgtgcagatttgctgcaagagaatgaacgt
gttgagaaagaaggcaagcagccagcaacctatgaatatatgctgttgggaatcactaag
gcttcattgtccacggattcgtttatttccgcggcatcctttcaagaaaccacgcgtgtg
ttaactgaagctgcgattatgggcaaaagagacgagctacgtgggctgaaggaaaacgtc
attgtgggtcgcttgattccggcgggtactggcttagcctatcatgccgcgcgacgtaag
cagcggttggggttgggcatggcagcaacggtgctaagcgaaggggagcaagccgtagaa
acacaagataaccaacttgcttga
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