Candidatus Nitrotoga sp. AM1P: W01_22290
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Entry
W01_22290 CDS
T06613
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
nim
Candidatus Nitrotoga sp. AM1P
Pathway
nim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
W01_22290 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nim03021
]
W01_22290 (rho)
03019 Messenger RNA biogenesis [BR:
nim03019
]
W01_22290 (rho)
Transcription machinery [BR:
nim03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
W01_22290 (rho)
Messenger RNA biogenesis [BR:
nim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
W01_22290 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
OB_RNB
S1CSD-TOTE-2
Mor
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BBJ24302
LinkDB
All DBs
Position
complement(2501149..2502405)
Genome browser
AA seq
418 aa
AA seq
DB search
MHLSDLKTKHITELVGMATTNQIDNANRMRKQDLIFALLKNQAKKGESIFGEGTLEVLPD
GFGFLRSPDISYLAGPDDIYVSPSQIRRFNLHTGDSIEGEIRTPKEGERYVALVKVDRVN
SEAPENTKNKILFENLTPLFPTKQMALERDIRAEENVTGRIIDIVAPIGKGQRGLLVASP
KSGKTVMLQHIAHSIAANNPDAHLIVLLIDERPEEVTEMSRSVRGEVVASTFDEPATRHV
QVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALQRPKRF
FGAARNIEEGGSLTIIATALVDTGSRMDDVIYEEFKGTGNMEIHLDRRMAEKRIYPAINI
NRSGTRREELLIKSDLLPKIWVLRKLLYPMDELESMEFLLDKIKATKNNADFFDSMRR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatttatctgacctcaaaaccaaacacatcaccgaactggtgggcatggcaacaaca
aaccagattgacaatgccaaccgcatgcgcaagcaagacctgattttcgctttgcttaaa
aatcaagcaaaaaagggcgagagcattttcggcgaaggtacgctggaagtattacccgac
ggatttggctttctgcgctcgccggatatttcttacttggcgggaccggatgacatctac
gttagtccaagccaaatccgacgtttcaatctgcatactggagattcaatcgagggcgag
atccgcaccccaaaagaaggggaacgttatgttgccttagtaaaggtggacagggttaat
tccgaggctccggaaaatacgaagaataagatactgtttgaaaacctgacaccactattc
ccaactaagcaaatggcactggagcgagacatccgcgccgaagaaaacgttacgggtcgc
atcattgatatcgtcgctcccattggtaaaggtcaacgcgggttgctggtagcctcgcca
aaatctggcaagaccgtgatgttgcagcatatcgcccattccatcgcggcaaacaaccct
gatgcacatctgattgttctgctgatcgacgagcgtcccgaagaagtcaccgaaatgagt
cgtagcgtgcgcggtgaagtggtcgcatctacctttgacgagcctgccacacgccacgtc
caagtcgccgaaatggtgctggaaaaagccaagcgtctagttgagcataaaaaagatgtg
gtcatccttctggattccatcactcggctggcgcgtgcctacaacacagttgtgccgtct
tccggcaaagtgcttactggcggcgttgatgccaatgccctgcagcgtcccaaacgtttt
ttcggcgcagcccgcaacattgaagaaggcggctcacttaccattatcgccacggcgcta
gtggataccggttctcgcatggacgatgtgatttacgaagaattcaagggcaccggtaat
atggaaattcatcttgaccgacgtatggcagagaaacgtatctatccggccattaacatc
aatcgttccggtacacgcagggaagaattactgattaaatcggatcttttacccaaaatt
tgggtactgcgtaaactgctctatccgatggatgaattggaatcaatggaatttctactg
gataaaattaaagcgactaagaacaacgctgattttttcgattcaatgcgccgctaa
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