Candidatus Nitrotoga sp. AM1P: W01_22830
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Entry
W01_22830 CDS
T06613
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nim
Candidatus Nitrotoga sp. AM1P
Pathway
nim03030
DNA replication
nim03430
Mismatch repair
nim03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
W01_22830 (dnaE)
03430 Mismatch repair
W01_22830 (dnaE)
03440 Homologous recombination
W01_22830 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nim03032
]
W01_22830 (dnaE)
03400 DNA repair and recombination proteins [BR:
nim03400
]
W01_22830 (dnaE)
Enzymes [BR:
nim01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
W01_22830 (dnaE)
DNA replication proteins [BR:
nim03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
W01_22830 (dnaE)
DNA repair and recombination proteins [BR:
nim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
W01_22830 (dnaE)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
DUF2120
Motif
Other DBs
NCBI-ProteinID:
BBJ24356
LinkDB
All DBs
Position
complement(2566060..2569548)
Genome browser
AA seq
1162 aa
AA seq
DB search
MPQPSFIHLRLHSEYSIADGIVRIPEAIAAAKQDAVPALALTDLNNVFGLIKFYQAARAA
GIKPIIGCDVFISNPAERDKPFRLLLLCQSNVGYLRLCDLVTRAYLERQNSGRIEIHKQW
LRDGTDGLLALSGAHLGEVGTALLNGNQATARQLALEWAELFPSRYYLEVQRTGMAREEL
HVSETIKLAVELALPVVATHPIQFLSREAYKAHEARVCIAEGYVLNDKRRVRQFTPQQYF
KTQAEMITLFADFPEALQNSVEIAKRCNLTLQLGKPYLPDFPTPNGESLDDFLRTESELG
LHQRMLQLYPDETVRAAKVEEYASRLAFEIETIIKMGFSGYFLIVADFIRWAKLNDVPVG
PGRGSGAGSLVAYSLGITDLDPLRYALLFERFLNPERISMPDFDVDFCQDGRERVIEYVK
QKYGAASVSQIATFGTMASKAVIRDVGRVLDFPYGLCDRLSKLVPLEGVKPVSLKKAREL
EPEFNAIISSEEGVEELLELGARLEDLTRNVGMHAGGVLIAPGKLTDFCPLYYAEGSDKG
ISQFDKDDVEQIGLVKFDFLGLRTLTIIDWAVKYVNKMPAGLGFPIENRFSIENLPLEDK
PTYALLKAANTTAIFQLESPGMKKLIIKLQPDTFEDIVALVALYRPGPLESGMVEDFINR
KHGRSKADYFHPELEVSLKPTYGVIVYQEQVMQIAQIIGGYSLGAADLLRRAMGKKNAEE
MALQRSIFVDGAVARAVNKQLAEQLFDLMEKFAGYGFNKSHSAAYALVSYQTAYLKAHYP
AAFMAATLSSDMDNTDKVHIFYLDTLAQGISILPPDINSSVNRFMPVDEKTIAYGLEAIK
GTGKAAIDSIEDARKLGGPFRDLFDFCHRVDKRVVNRRATEALIRSGAFDTISDHRYQLL
ASLEVALCSAEQKAQSINQNSLFEDDASVTMSVQVKNVPRWTLREQLQHEKTSLGFYLSG
HPYQEYANELENFVKTRLADITLQALPQNGNNKRGGVPVVLAGIVSAVRIQQTRRGRMAI
VTLDDGSAQLEMMVFNEVFEANRPWIREDELLVVRGKASLDEYSGNMRVNGEELFDFASA
RSTFAKRLELVVSSDARISVTELKELLEPYREGKCMAVVCYRNISGSANLKLGEPWSVTL
HSDLMSGLKNLLGEQNVHIVYS
NT seq
3489 nt
NT seq
+upstream
nt +downstream
nt
atgccccaaccctctttcatccatctgcgtctgcacagcgaatactccattgccgatggc
attgtgcgcattcccgaggcgattgccgccgccaagcaggatgccgtgcccgccctggca
cttaccgacctcaataatgtattcggcctgatcaaattctatcaggcagcgcgcgctgcc
ggcatcaagcccatcattggctgtgatgtattcatcagcaatccagccgagcgcgacaag
ccgttccggctgctgttgttatgccagtccaatgttggctacctgcgattgtgtgatttg
gtgacacgcgcctatctggaaaggcaaaacagtggtcgcatcgagatacacaaacaatgg
ttgcgcgacgggacagatggactgctcgcattatccggcgcgcatctcggtgaggtcggc
acggcgctgctgaatggcaatcaagcaacggcacgtcagctggcgcttgagtgggcagag
ctattccccagtcgatattatctggaagtacagcgaaccggcatggcgcgcgaagagctg
cacgtgagtgaaacgatcaaactggccgtagaactggcgttaccggtagtagctacacat
ccgatccagtttctaagccgtgaagcttacaaagcgcacgaggcgcgcgtgtgcatcgcc
gaagggtatgtgctgaatgacaaacggcgcgtgcgccaatttaccccgcagcagtatttc
aaaacccaggccgagatgataacgctgttcgccgattttcctgaagcgttgcaaaacagc
gtggagatcgccaagcgatgtaatttgaccttgcaactgggtaaaccctatttgccggat
ttccccactcccaatggcgaaagtctggatgattttctgcgtacggaatccgaactcggt
ttgcatcagcgcatgctgcagttgtatccggatgaaactgtgcgcgccgcgaaggtggaa
gaatacgcctcacgcttggcattcgaaatcgagaccattataaaaatgggtttctctggc
tactttttaattgtggccgatttcatccgctgggccaagctcaatgacgtgccagtcggt
cccggccgcggctctggcgcaggttcactggtggcttacagtctcggtatcaccgacctt
gacccactacgctacgccctgctctttgagcgctttctgaatccagaacgcatatccatg
cccgacttcgatgtcgatttctgccaggatgggcgtgagcgcgttatcgagtatgtgaaa
caaaaatacggcgcggcaagcgtgtcgcagattgccaccttcggcaccatggcatccaaa
gcggtgatccgcgatgtcggacgcgtgctggattttccttacggactgtgcgatcgcctg
tccaagctcgttccgctggaaggcgtcaaaccggtatcactgaaaaaagcacgtgagctg
gagccggagtttaacgcgatcatcagcagcgaagaaggcgtggaagagctacttgaactg
ggtgcacgactcgaagatttaacgcgcaatgtcggcatgcacgcgggcggggtactgatc
gcaccgggcaagctgaccgacttttgtccgctttattacgccgagggcagcgacaagggc
atcagtcaatttgataaagacgatgtggaacagatcggcttggtgaaattcgactttttg
gggttgcgcacgctcaccatcattgattgggcggtgaaatatgtaaacaagatgcccgca
ggcctaggttttcccattgaaaatcgcttctcaatcgaaaaccttccgctggaagataaa
ccaacttacgccctgctcaaggctgccaacaccacagcgatatttcagcttgaatctcct
ggcatgaaaaagctgattatcaagctgcaaccggacacctttgaagacatcgtggcactg
gttgcgttatatcgtccgggtccgctcgaatcaggcatggtagaggacttcatcaaccgc
aaacatggccgttccaaggctgattattttcatcccgaactggaagtttcgctcaagcca
acttacggtgtgatcgtgtaccaagagcaagtgatgcagatcgcgcagatcatcggtggt
tattcgctgggagcggcggacttgttgcgccgcgcgatggggaaaaaaaatgctgaagag
atggcactacaacgcagcattttcgtggacggcgctgtagcgcgtgctgtcaacaagcaa
ctagcagagcaactgttcgacctgatggaaaaattcgctggatacggctttaacaaatcg
cattctgctgcctatgcgttggtgtcttaccagaccgcctatctaaaagcacattacccg
gcggcattcatggccgccacattgtcatcggatatggataacaccgacaaagtgcatatt
ttctatctcgatactctggcgcaagggataagcattttgccgccggatattaactcgtct
gtaaaccgcttcatgccggtggacgaaaaaacgattgcatatggattggaagccattaaa
ggtacaggtaaagctgcaatagatagcattgaagatgcccgtaaactcggtggcccattc
cgcgacctgttcgatttttgtcatcgcgtagataagcgcgtagtgaatcgtcgtgccact
gaagcgctaatccgcagtggcgcattcgatacgatttcggatcatcgctatcagttgctg
gcgtcgctcgaggtcgcgctttgcagcgcggagcagaaagcacaatccatcaatcaaaat
agtctattcgaagacgatgcaagtgtgacgatgtcggtgcaagtgaagaacgtcccgcgc
tggacgttgcgcgagcaattgcaacacgaaaaaaccagcttgggattttatctcagcggc
cacccctatcaagaatatgccaacgaactggaaaatttcgtcaagacacgcctggccgat
atcacgctgcaagcgctgcctcaaaacggcaacaacaaacgcggtggagtgccagtagta
ttggctggcatcgtgtctgccgtacgaatacagcagacacgacgtggacgcatggcaatt
gtcacactggacgatggcagcgcacagttggaaatgatggtattcaacgaagtattcgag
gccaatcgcccgtggatacgtgaagatgaattgctagtggtgcgcggcaaagccagtctc
gacgagtattccggcaacatgcgcgtcaatggtgaggagctattcgatttcgcctcagcg
cgctccactttcgcgaagcgcttggaacttgttgtttcgtctgacgcacgcattagcgtg
acagaattaaaagaactactcgagccctaccgagaggggaaatgcatggcagtagtgtgt
taccgcaatataagcggaagcgcaaacttgaagctgggcgagccttggagtgtcacgctg
cacagtgatctaatgagcggattaaagaacctgctgggcgaacagaatgttcatatcgtt
tattcttga
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integrated database retrieval system
