Candidatus Nitrotoga sp. AM1P: W01_23420
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Entry
W01_23420 CDS
T06613
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nim
Candidatus Nitrotoga sp. AM1P
Pathway
nim03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
W01_23420 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nim03400
]
W01_23420 (mfd)
Enzymes [BR:
nim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
W01_23420 (mfd)
DNA repair and recombination proteins [BR:
nim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
W01_23420 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
MFD_D3
UvrB_inter
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
Helicase_C_2
ERCC3_RAD25_C
AAA_25
CTE_SPB4
Motif
Other DBs
NCBI-ProteinID:
BBJ24415
UniProt:
A0A455XDD6
LinkDB
All DBs
Position
complement(2641796..2645281)
Genome browser
AA seq
1161 aa
AA seq
DB search
MLFSSSHPRPRYTHLYGSSDALALAQYAELHVPLVIIAASALEAQRLVEEIPFFSPELRV
HLLPDWETLPYDHFSPHQDLISERLATLHHIRSQSCDVIIVPITTALYPLSPVEYLAAFT
FFLKCGEKLDIAQLREQMTLAGYTHVQQVLTPGEYCVRGGLIDLFPMGSSVPYRIDLFDD
EIDTIATFDVDTQRTIYPVRDIRLLPAREFPLDEAGQARFRQNFRDRFEGDPSKASIYKG
VSRGIAPAGIEYYLPLFFERTATLFDYLPAHATLCMHHNVDAAIATFAKDAQSRYNLLRG
DPQRPLLEPHELFLNAESFFIAAKNFKRVDLIANIPSSSQTDNSEQKECVEETPPTLFQE
ERTHKTLTSCATKKLPGIAVNRRADIPTHALQSFLQDYTGRVLLLADSLGRREIMAEYLR
EYSLTPALCENYAQFFAGNDHFMLTVGALQNGFMLQDDQLAIITESELYAAQPRNRIART
TKKSNVEGMLRDLSELKPGDPVVHEQHGIARYHGLINLDLGEGENEFLLLEYAGGDKLYV
PVAQLHVISRYSGGAPETAPLHKLGSGTWDKAKRRAMQQVRDTAAELLNLYAQRATRKGH
QFKLSQHDYEAFAAGFGFEETPDQATAIEAVVSDLQSGKPMDRLICGDVGFGKTEVALRA
AFIAAMDGKQVAILVPTTLLTEQHFQNFCNRFADWPIKIGELSRFRSAKEQTQALKDMED
GKLDIIIGTHKLIQKGIKFHNLGLIIIDEEHRFGVQQKERLKALRAEVDVLTLTATPIPR
TLAMSLEGLRDFSVIATAPQRRLSIKTFVSNYSPGVIREAVLRELKRGGQVYFLHNEVDT
IANMAEKLETLLPEARIRIAHGQMGERDLEAVMRDFYQQRFNVLLCTTIIETGIDVPSAN
TIIMNRTDRFGLAQLHQLRGRVGRSHHQAYAYLLVDNMEGLTAQAKKRLEAIQAMEQLGS
GFYLAMHDLEIRGAGEVLGESQSGEMHEIGFSLYADMLNAAITSLRLGHEPDMAHPLGVA
TEINLHTPALLPNNYCGDIHQRLVLYKRMANCTTSEELDDMHQELIDRFGLLPPPAHTLL
DCHRLRIAAKQLGIIKVDASSEAIQIQFMQNPPIDPMHIITLIQNKRQYKLNGPDKLRIE
LKYGDVEQRVLAIKNFFKELS
NT seq
3486 nt
NT seq
+upstream
nt +downstream
nt
atgctgttttcttcttcacacccccgtccacgttacacccatctgtatggctcgtctgat
gccttggctctggcacaatatgccgaactacatgtaccactggtgataattgccgccagc
gcgctggaagcacaacggctagtggaagaaattccatttttttccccggagctgcgtgta
catctgctaccggattgggaaacactaccttatgatcatttttcgccgcatcaggacctc
atctccgagcgacttgctacgctgcatcacattcgcagccaatcgtgtgatgtgatcatc
gtcccgataaccactgcgctatatccgttgtcaccagtggaatatctggctgcgttcacc
ttctttcttaagtgcggcgagaaactggacattgcccagttgcgtgaacaaatgacattg
gctggttatacccatgttcagcaggtgctgacaccgggcgagtattgcgtgcgtggtggt
ttgattgacctgtttccaatgggcagtagtgtgccttaccgcatcgacctgttcgatgac
gaaattgacactatcgcgaccttcgatgtggatacccagcgcaccatttatccggtgcgg
gatattcgcctgttaccggcgcgcgagttcccacttgatgaagctggacaggcgcgtttt
cgtcaaaatttccgcgatcgtttcgagggtgatccatccaaagcaagcatttacaaaggt
gtgagccgtggcatcgcgcccgcaggcatcgaatattacctcccattatttttcgagcgt
actgccacattatttgattatttgcctgcgcatgccacgctgtgcatgcatcacaatgtg
gatgctgccattgccacttttgcgaaggatgcacagtcgcgctacaacctgcttcgcggc
gacccgcaacgtcccctgctggaaccgcacgaattatttttgaacgcagaaagttttttt
attgctgcgaaaaatttcaaacgtgtcgatctcatcgcaaatatcccctcttcctcccaa
actgacaattccgagcagaaagaatgcgtagaagaaactccccctaccctctttcaagaa
gaaaggactcataaaacccttacttcttgcgctaccaaaaaattgcccggcatcgcggta
aatcggcgcgccgacattccaacacatgcactccagagctttctacaagattacactggc
cgggtattgctgctcgccgacagtttgggacggcgcgaaataatggccgagtatttgcgc
gaatactccctgacacctgccctgtgtgagaactatgcgcaatttttcgccggtaacgat
cacttcatgcttaccgtaggggcactgcagaatggtttcatgttgcaagatgaccaattg
gcaattattacagaaagtgaactatatgctgcacagccccgcaaccgaattgcgcgcacc
acaaagaaaagcaacgtggaagggatgctgcgcgacctgtccgaactcaagccaggtgac
cctgtggtgcatgaacagcatggcatcgcacgttatcatggcctgataaaccttgatctc
ggcgaaggcgagaacgaatttttgttgctggagtacgctggtggagacaaattgtatgtt
ccagtagcacaactgcatgtaatcagccgttacagtggcggagccccggaaaccgcacca
ttgcacaagctgggcagcggcacttgggacaaggccaaacgtcgcgccatgcagcaggtg
cgcgataccgctgccgaattgctcaatttgtatgcccagcgcgccacgcgcaaaggtcac
caattcaaactgtcacaacatgattacgaagcgttcgccgccggttttggttttgaagaa
actccggaccaggccaccgccattgaggcggtggtcagtgatctgcagagcggcaagcct
atggatcggctaatctgcggcgatgtgggttttggtaaaacggaagtcgctttgcgcgca
gcctttattgcagcgatggatggcaaacaagtagcaatactggtacccaccacgctgctc
acagaacaacatttccagaacttctgcaatcgttttgccgactggcccatcaaaattggc
gaactgtcgcgcttccgctctgccaaggaacagacccaagcgctgaaagatatggaagat
ggcaagcttgacatcatcatcggcacacacaagctgatccagaagggtattaaattccac
aatctgggactgatcatcatcgacgaagaacaccgcttcggcgtgcagcagaaggagcgc
ctcaaggcgctacgcgccgaagttgacgtgctcaccctgaccgccacgccgattccgcgc
acgctggcaatgtctttggaagggctgcgcgatttctcggtgattgccactgctccgcag
cgccgtctgtcgatcaagacctttgtcagcaactacagcccgggcgtcatccgtgaagcg
gtgctgcgtgaactaaagcgcggcggacaagtctacttcctgcacaacgaggttgatacc
atcgccaatatggcggaaaagctggagactttactgcctgaagcacgtattcgcatagcg
cacggccagatgggagaacgcgacttggaagcggtcatgcgtgatttttatcaacagcgc
tttaatgtgctgctatgcaccaccatcatagaaaccggcatcgacgtacccagtgccaat
accatcatcatgaaccggactgaccgttttggattggcgcagttacatcagttgcgcggc
cgggttgggcgctcgcaccaccaagcgtatgcctatttattggtggacaatatggaggga
ctcaccgcacaggccaagaaaagattggaagcaatccaagccatggagcaactgggaagc
ggtttctatcttgcaatgcatgatctggaaattcgcggcgcgggcgaggttctgggcgag
tcacaaagcggtgaaatgcacgagattggtttttcgctctacgcggacatgctcaacgcg
gccattacctcgctcagactgggccatgaaccggacatggcccacccacttggggtcgcc
accgagattaacctgcatacccccgccttgctacccaacaattattgcggcgacattcac
caacggctggtgctgtacaaacgtatggctaactgcaccacatcagaagaactggacgac
atgcatcaggagctgatagaccgcttcggtctactgccgccgcctgctcatacattgctt
gattgccaccgtctgcgcatcgctgccaagcagctcggcattatcaaggtggatgcttcc
agcgaggcgattcaaattcagttcatgcaaaatccgcccatagatccgatgcacatcatc
acgctcatccaaaacaagcgccaatacaaattgaatggtccggacaaactgagaattgaa
ttaaaatacggcgatgtcgagcagcgtgtgctggcgatcaagaacttttttaaagaacta
tcgtga
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