Candidatus Nitrotoga sp. AM1P: W01_23860
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Entry
W01_23860 CDS
T06613
Symbol
rhlE-2
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nim
Candidatus Nitrotoga sp. AM1P
Pathway
nim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
W01_23860 (rhlE-2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nim03019
]
W01_23860 (rhlE-2)
Enzymes [BR:
nim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
W01_23860 (rhlE-2)
Messenger RNA biogenesis [BR:
nim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
W01_23860 (rhlE-2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HI1480
AAA_19
P-loop_SecA
CMS1
AAA_22
UvrD_C
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
BBJ24459
UniProt:
A0A455X7Z2
LinkDB
All DBs
Position
complement(2688331..2689659)
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AA seq
442 aa
AA seq
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MTFSALGLSDEIVRAVTERGYTEPTPIQAQAIPVVLSGGDLLAGAQTGTGKTAGFTLPIL
QRLTASAKPATSKAPIRALVLIPTRELAAQVEESVRDYGKYLKLTSMTMIGGVNINPQIQ
RLKSRVDILVATPGRLLDHLQQKTLDLSHIEILVLDEADRMLDMGFIRDIKKILAILPKK
RQNLLFSATFSNEIKMLADGLLNKPALIEVARRNATAELITQKIYPVDRERKRELLTHLI
KKYNWHQVLVFTRTKHGANKLAEQLSKDDIPALAIHGNKSQAARTRALAEFKTGKLQVLV
ATDIAARGIDIIELPHVVNFEMPNVSEDYVHRIGRTGRAGSEGEASSLVCIDEHKLLWDI
ERLTKREIPVVQIPGFEPDPRIKAEPILNGQNRGQGGERKQGQGRSPRSAPRAGGGQGRA
NAATGKPVARKPVLHRSGGYNR
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgactttctcagccctcggtttgtccgatgaaatcgtccgcgccgttaccgaacgtggt
tacaccgaaccaacgcccattcaggcgcaagccatcccggttgtgctatccggcggcgac
ctgctggctggtgcacagactggcacgggcaagactgctggtttcaccctgcctatcctg
caacgtcttactgcatccgccaaacccgcaaccagtaaggcaccgatacgcgcgttagtt
cttatccctacgcgcgagcttgctgcacaggtagaagagagcgtgcgcgattatggcaaa
tacttgaaacttacttcgatgaccatgattggtggcgttaacattaatccacaaatacag
cgcttgaaaagccgtgtggatattttggttgccacacctggccggttgctcgatcacttg
cagcagaaaacgctggatctatcgcatatagaaatactggtgctggatgaagccgaccgt
atgctggacatgggttttattcgcgacatcaaaaaaatcctggctatattgcccaagaag
cggcaaaatttactgttttccgccaccttctccaacgaaatcaaaatgctggccgatggg
ttgctcaataaaccggcgctgatcgaagtggctcgccgtaacgctactgcagaactgatc
acgcagaaaatttacccggtggatcgcgaaagaaagcgagagttgctcacccatcttatc
aagaaatataactggcatcaggtgctggtgttcacacgcaccaaacatggtgccaacaag
ttagcggaacaactcagcaaggacgacattcccgcgctggccatccacggcaacaagagc
caggcggcgcgcacccgcgcattggcggaatttaaaaccggcaaactgcaggtgctggtg
gcaactgacattgctgcgcgtggcatcgacatcattgaattgccgcacgtggtcaacttc
gagatgcccaatgtatcggaagattatgtccaccgtattggacgcaccggtcgcgcaggc
agcgaaggcgaggcaagttctctggtatgtattgatgagcataagctgctgtgggacatt
gagcgactgaccaagcgcgaaattccggttgtgcaaatacctggcttcgagcccgatcct
cgcatcaaggcagagcctattttaaacggtcagaatcgcggtcaaggtggggagcgtaag
caagggcaaggtcgtagtcctcggtcagcgccgcgtgcgggtggtggtcaaggccgcgcc
aatgctgctactggtaaacctgttgcccgcaaaccggtattacaccgttccggtggctac
aatcgctaa
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