Nitrosopumilus adriaticus: NADRNF5_0431
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Entry
NADRNF5_0431 CDS
T03758
Symbol
rtcB
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nin
Nitrosopumilus adriaticus
Brite
KEGG Orthology (KO) [BR:
nin00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nin03016
]
NADRNF5_0431 (rtcB)
Enzymes [BR:
nin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NADRNF5_0431 (rtcB)
Transfer RNA biogenesis [BR:
nin03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NADRNF5_0431 (rtcB)
Prokaryotic type
tRNA splicing ligases
NADRNF5_0431 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AJW70127
UniProt:
A0A0D5C141
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All DBs
Position
369530..370978
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AA seq
482 aa
AA seq
DB search
MSSSDPKKIGENQYQIDADSNLGMKVPVRIYADEPLLQKMLSDRTILQARNVASIPGIVS
HSVVLPDGHEGYGFPVGGVAAMDAEEGMISPGGVGYDINCGVRLLRSNLDENTVRSKLKE
LVNDLFSSIPSGVGSKGAVKLSHSELDEVLVNGVNWAIDHGYGSSNDSDVCEENGQIQNA
DPNQVSDKARKRGAPQLGSLGSGNHFLEVQKVSEIHDEEAANRMGIKEGTITVLIHCGSR
GFGHQVCSDYLRVSEQAMQKYDIDLPDRELACVPNNSEEGESYRKAMFAALNFAWSNRQI
LTHWTRNSFERVFNQSESDLDMKLVYDVAHNIAKVEKHKVDGSERKLVVHRKGATRAFPA
NRDEIPSKYRDLGQPVLVPGSMGTASWILLGKPNSMNLSFGSTAHGAGRTMSRSKARRNY
TENDVKKSLNDQGIFIKALTRDGVVEETPQAYKDVDAVVNVSHNLGIATKVAKLVPIGVI
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcctctgacccaaaaaaaatcggcgaaaatcaatatcaaattgatgctgattct
aaccttggaatgaaagtacctgtgagaatttatgcagatgagccattattacaaaaaatg
ttatctgatagaacaattttacaagcacgaaatgttgcatcaattccaggtatagtcagt
catagcgttgttttgcctgatgggcatgaaggctatggttttcccgtaggtggtgtcgca
gcaatggatgctgaggaaggaatgatcagccctggtggtgtaggatatgatattaattgt
ggtgtgagattacttcgttcaaatttagatgagaatacagttcgttctaaacttaaagaa
cttgtcaatgatctatttagctcaattccttccggagttggttctaaaggggcagtaaaa
cttagtcattcagaacttgatgaagttttagttaacggcgtaaactgggcaatcgatcat
ggatatggttcatcaaatgattcagatgtttgcgaagaaaatggtcaaattcaaaatgct
gatccaaaccaagtttctgataaagcaagaaagagaggtgcaccacaacttggaagcttg
ggttctggaaatcattttctagaagtacaaaaggtttcagagattcatgatgaagaagct
gcaaacagaatggggattaaagaaggaacaattactgttttaattcattgtggctctaga
ggttttggtcatcaagtgtgtagtgattatcttagagtttccgaacaagcaatgcaaaaa
tatgatattgatttacctgatagggaacttgcatgtgtcccaaacaattctgaagagggt
gaatcttatagaaaagcaatgtttgctgcattaaattttgcatggagtaatagacaaata
ctcactcattggactaggaattcttttgaacgtgttttcaatcaatcagaatctgatctt
gatatgaaattagtttatgacgttgctcataatatcgcaaaagtagaaaaacacaaagtt
gatggtagcgaaagaaaattggtagttcatagaaaaggagcaacaagagcatttcctgca
aatcgtgatgaaattccatcaaaatatcgtgatttaggtcaacctgttttggttcctggc
tcaatgggtactgcaagctggattttacttggtaaaccaaattcaatgaatttgagtttt
ggttctactgcccatggtgctggaaggactatgtctagatcaaaagctagaagaaactat
actgaaaatgatgtaaaaaaatctcttaatgatcaggggatctttatcaaggcattaaca
cgggatggggttgtcgaagaaactcctcaggcatacaaagatgttgatgctgtagttaat
gtttctcataatttaggaatagccacaaaagtagcaaaattagtgcctattggtgtgatt
aaaggttga
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