Candidatus Nitrospira inopinata: NITINOP_0749
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Entry
NITINOP_0749 CDS
T04169
Symbol
rtcB
Name
(GenBank) tRNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nio
Candidatus Nitrospira inopinata
Brite
KEGG Orthology (KO) [BR:
nio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nio03016
]
NITINOP_0749 (rtcB)
Enzymes [BR:
nio01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NITINOP_0749 (rtcB)
Transfer RNA biogenesis [BR:
nio03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NITINOP_0749 (rtcB)
Prokaryotic type
tRNA splicing ligases
NITINOP_0749 (rtcB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
CUQ65724
UniProt:
A0A0S4KMQ9
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All DBs
Position
1:714339..715769
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AA seq
476 aa
AA seq
DB search
MDLQRLTQRGENEWMIEPQGTMRVPGVIYATESLIREMDDKVYEQVVNVATLPGIVRASY
AMPDAHWGYGFPIGGVAAFNPDKGGVVSAGGVGFDISCGVRLLRTGLTAEEVHPIKEQLA
DALFHHVPAGVGSTGRLRLNRDEMDAMLSGGAKWAVSKGYGLRDDLALIEEGGCMAGAEP
DCVSDQAKKRQQDEMGTLGSGNHYLEVQRVARIFDEPIGAAFGLREGDLVVSIHCGSRGL
GHQIGTEFLKRMAVSASRHQIALPDRELACAPINSEEGQEYLGAMRAAINCALANRQIIT
HLVREVFEKLLPQASLTLLYDVSHNTCKVETHPIDGRPTRLFVHRKGATRAFGPGHSDLP
PSLRPIGQPVLIGGTMGTASYVLVGTTKGMALAYGSACHGAGRSMSRHQATRRWQGRDVV
KELAGRGILIRSPSMRGVAEEAPGAYKDVSEVVNAADEAGLAKKVARLEPLVCIKG
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggaccttcaacggctgacacaacggggcgagaacgaatggatgatcgaaccccagggc
acgatgagggtgccaggtgtgatctatgccacggaatctttgattcgcgagatggacgac
aaggtctatgaacaggtcgtcaacgtggcgactcttcctgggattgtccgggcgtcctat
gcgatgcctgatgcccactggggctatgggtttccgattggaggtgtcgcggcgttcaac
cccgacaagggcggtgtcgtctccgccggtggtgtgggctttgacatctcttgcggcgtg
cgcttgcttcgcacgggactcacagcggaggaggttcacccgatcaaggaacaactggcc
gacgccctgtttcatcacgttcctgccggtgtcggcagcacgggtcgattgcgactcaat
cgggacgagatggacgccatgttatccggcggagcgaaatgggccgtctccaaaggctat
ggcctgcgcgatgacctggccttgatcgaagaaggagggtgcatggctggcgccgagccg
gactgcgtgtccgaccaggccaaaaagcggcaacaggacgagatggggacgctcggctcc
gggaaccattatctggaagtacaacgggtggccaggatttttgatgaaccgatcggcgcg
gcctttggcctccgcgaaggggatctggtcgtgagcatccattgcggctcgcgcggcctg
ggccatcaaattggaaccgagttcttaaagcgcatggctgtgagcgcatcgcgccatcag
attgcgttgcctgatcgtgagttggcctgtgcccccattaactcggaggaagggcaggaa
tatctcggcgccatgcgcgcggcgatcaactgcgcgcttgccaatcggcagatcattacc
cacctggtcagggaggtgtttgagaagctgctcccccaggcctctctcaccctgctctac
gacgtctcgcataacacctgtaaagtggaaacccatcctatcgacgggcgaccgacgcgc
ctcttcgtccatcgaaagggtgccacgcgagcctttggccctggccattccgacctccct
ccctcacttcgacccattggtcagccggttctcattgggggcacgatggggacggcttct
tatgtgcttgttggcaccaccaagggcatggccttggcctatggctccgcctgccatgga
gcgggccgaagcatgagtcgccatcaggccaccaggcgatggcagggccgcgatgtggtg
aaagaattggccgggcgcgggattctgatccgcagcccatccatgaggggcgtcgccgaa
gaggcgccaggcgcctacaaagatgtgagcgaagtggtcaatgcggctgacgaagccggt
ctggccaagaaggtcgcccggcttgaacccctggtgtgcatcaaggggtag
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