Candidatus Nitrospira inopinata: NITINOP_2088
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Entry
NITINOP_2088 CDS
T04169
Name
(GenBank) conserved protein of unknown function
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
nio
Candidatus Nitrospira inopinata
Brite
KEGG Orthology (KO) [BR:
nio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nio03400
]
NITINOP_2088
Enzymes [BR:
nio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NITINOP_2088
DNA repair and recombination proteins [BR:
nio03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
NITINOP_2088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
UvrD_C
ADDB_N
Exonuc_V_gamma
Polysacc_deac_3
Motif
Other DBs
NCBI-ProteinID:
CUQ67060
UniProt:
A0A0S4KXB0
LinkDB
All DBs
Position
1:2018236..2021400
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AA seq
1054 aa
AA seq
DB search
MLKVVIGRFHPTLESALVERVRRLKAQDPLAPLAIVVPSNPLADRLRALLAVEHRLSLLS
LHVLTFHQLALRLADERTSDHALPRVVDELFFEQVIRYLVCRTLSRHEPFQRLGRTAGTW
GALWATIRDLKDALVDPDQMMRGLREDCFDEDDQGWLEALATLYAAVRESGRTLGVGTQN
DLAERLTPLLPTSSFLRPFKEVLYYGFYDLTQVQLSFFEAVSRAKETTLFFPLEDEPAYD
FARRFFDRCIRPLAATIEREIGPSPPSSEAGQEVRFAIRNVIGPEEELASACRMILELVE
TNGYRFDEIGVVARTLDPYGPHIQSVFDRHRVPFRTTATRPLMEEPTSKLMLQLVSLPLN
DWYAPVVLDVVTSPFYTTDLCDDRSPAYRPEQWRLAVQSLRITRGTDEWNRLDRVGQGRL
ALDGEESPLDSLAIAPETLALLRQVVAELMKDCSTLPSKGPIGRLVEACQVLVDRRIRRP
DPGASRQDPLAADRMAMWAALDRLWATLLELESLNEELTWHEFVELLTRAIEKTTAPVAS
VSCAGVTVADVMAARGVPFKALFLLGLNDQTFPRSIREDGFLRDRHRRVLDATLGFKIDE
KLAGHEEERLLFHLACRSARHRLYLSYQRADESGRTLATSPYLDDVARLFGAEDSGAEVI
PRRLVERLRRRPAERFVIAPADLIQWLALNGQDPADLIDALGRDGDLFRHAIEALGRIEA
DDHQLNEFDGVTGQLETHWRRLLDQGMAPTPLERYARCPFQYFAADVLRLETNRMVIEPG
PDAALVGSLCHAALRHCYERLVQAGWPVQRVEEDELTRIVASSVERASADLESRQGVGPY
LLWEMAKETVCQLVREAVEADEAEQAEQPYSPIAFEVEGEGGVPETLGGKPLKIRGRVDR
LDRHRVSGVLRVIDYKLKLGSSMKPEDRNLVQSAVRGYRLQPPLYSCLSVQGSSLPDLVQ
FFFLAPQWVPSISRSTFERPSWSSDTGLLIRKTLATLLEGINRGRFFILPDGYCDGCLYR
PACRREHGPTWWRVYRAAESKSLRAMRKHKVNGE
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaggtcgtcatcggtcgattccatcccactctcgaatccgcattggttgagcga
gtcaggcggctcaaggcccaagatcccttggcgccgctcgcgatcgttgttccgtccaat
ccgctggccgaccgtcttcgggccctgctggccgtcgaacaccggctgtcgctgctgagc
ctgcacgtcttgacctttcatcaactcgccctccgcctggcggacgaaagaacgtccgat
catgcgttgcctcgcgtcgtcgatgagttgtttttcgaacaggtgattcgttatctggtt
tgccgcacgctctcacggcatgagccgtttcagcgacttgggcgcaccgcggggacctgg
ggcgccctctgggccacgattcgcgatttgaaggacgcgctcgtcgaccccgaccagatg
atgcggggactgcgcgaagactgtttcgatgaagatgaccaagggtggctcgaagcgctc
gcgaccctctacgcggccgtcagagagtccggtcgaacgttgggggtcgggacacaaaat
gacctcgccgagcgcctcactcccctgctgccgacctcttcatttctccgaccgttcaaa
gaggtgctctattatggattctacgacttgactcaggtccagctctcgttctttgaggcc
gtgagccgcgccaaagagacgacgctgttcttcccgttggaagatgagccggcctatgac
tttgcgcggcgattcttcgatcgctgcatcaggccgttggcggcgacgattgagagggag
atcggaccatcgccaccgtcatccgaagcgggccaagaggttcggtttgcaatacggaac
gtgatcggccctgaagaagaattggcttcggcctgccgcatgatccttgagttggtcgaa
accaacggctatcggttcgacgagatcggcgtcgtggctcgcacgcttgatccctacgga
ccgcatattcagtcggtctttgaccgccatcgggtgccgtttcgtacgacggccactcgg
ccgttgatggaagagccgacaagcaaactgatgctccagcttgtctcgttgccgttgaac
gactggtatgctccggtcgtgctcgacgtcgtgacgtctcccttctacacgaccgatctg
tgcgatgaccggtcgccggcctatagacccgaacagtggagactcgccgttcagtccctg
cgcatcactcgcggaacggacgaatggaacagactggatcgggtcggccaggggcgattg
gcgctcgacggcgaggagagcccgctcgattccctggcgattgccccggaaacgctcgca
ttgctccgacaagtcgtcgccgaactgatgaaagactgttccacgttgccgtccaaggga
cccatcggtcggctggtggaggcctgtcaggtcctggttgatcggcgcatccgtcggcct
gatccgggagcgagccgccaagatccccttgccgctgatcggatggcgatgtgggcggct
ctggatcgtctctgggccacccttctggaattggagtcgctcaatgaagaactgacctgg
catgagttcgtcgaattgttgacgcgcgccattgaaaagaccacggcgccggttgcttcc
gtctcctgtgccggtgtgacggtggcggacgtgatggccgctcgcggggtgccgttcaag
gcgttgttccttttgggactgaacgatcaaaccttcccccgttccatccgagaggacgga
tttctgcgggatcggcaccgtcgcgtgctggatgccacgttggggttcaagatcgatgaa
aaactggccggccacgaagaagagcggttgttgttccatctcgcctgtcgctcggcacgt
caccgtctgtatctctcctatcaacgggccgatgaatcgggccgcacgctggcgacgtcg
ccgtatcttgacgacgtcgcccggctgtttggagcggaagattccggtgcggaagtgatt
ccgcgccgcctggtggagcgattgcgccggcgaccggcggagcgattcgtcattgcgcct
gccgatctcatccaatggctagccctgaacggccaggacccggctgatttgattgatgcg
ctgggtcgcgatggggacctgtttcgtcacgcgatcgaggcccttggccggatcgaggcg
gacgatcaccaactcaacgagttcgacggagtaaccggacagcttgaaacccattggcga
cgtctgctcgatcaaggaatggctccgacgccgctcgaacggtatgcccgttgtcccttt
cagtatttcgccgccgacgttctgcggttggaaacgaaccggatggtaatcgaaccggga
ccggacgccgcccttgtcggcagcctctgccacgctgcgctgcggcactgttacgagcgg
ctcgtgcaagccggatggccggttcaacgggtggaggaggatgagttgacaagaatcgtt
gcttcgtccgttgaacgggcctcggctgatctggagagtcggcaaggggtgggcccttat
ctcctctgggaaatggcgaaagagacggtctgtcagcttgtgcgcgaggcggtggaggcg
gatgaagcggaacaggccgagcagccgtacagccccattgcatttgaggtggagggagag
gggggtgttccggagactcttggcgggaagccgttgaaaattcgaggccgggtggatcgg
ttggatcggcatcgggtgtccggcgtactgcgtgtgatcgactacaaactcaagcttggg
tcgagcatgaagccggaagatcggaatctggtgcagtcggcggttcggggttatcgtttg
cagccgccgctctacagttgcctttccgtgcagggatcttctttgcccgacctcgtgcag
ttcttttttctcgcgcctcagtgggtgccgagcatcagccgctcgacgttcgagaggcct
tcgtggtcgtccgataccggtctcctgattcggaagacgctggccacactgctcgaagga
atcaaccgcggacgattttttatcttgccggacggctattgcgacggctgcctctaccgg
cctgcgtgccggcgggaacatggtcccacctggtggagagtctatcgtgcggctgaatcg
aaatcgctgagggcgatgcggaaacacaaggtgaacggtgagtga
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