Candidatus Nitrospira inopinata: NITINOP_2318
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Entry
NITINOP_2318 CDS
T04169
Symbol
rnd
Name
(GenBank) Ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
nio
Candidatus Nitrospira inopinata
Brite
KEGG Orthology (KO) [BR:
nio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nio03016
]
NITINOP_2318 (rnd)
Enzymes [BR:
nio01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
NITINOP_2318 (rnd)
Transfer RNA biogenesis [BR:
nio03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
NITINOP_2318 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Hydant_A_N
Motif
Other DBs
NCBI-ProteinID:
CUQ67290
UniProt:
A0A0S4KVR3
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All DBs
Position
1:2262229..2263437
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AA seq
402 aa
AA seq
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MAIHPPYYIANAKALREFCERLQDSPRLALDTEFVGEDSFVPKLELIQVATDDVAAVIDF
PAVQADNALDLFWEILCDPDIEKVVHAGRQDLDLFAVHAGRIPKPFFDTQIAAAMVGYGA
QVAYASLVQRVHGAKLDKAHTFTNWSARPLSHDQLAYALDDVTYLLAIYDHLRARLSKFG
RLEWAVEEFSRLESAVGDMRRDSHARYQRVRGWDTLKPKSAAVLRALAAWREDEAKRRNS
PRSRVMRDEVLLQLARRPPSTVQELRSVRGMHESEVNRNGETLLAVIGAALALPSSEWPE
VPRERKPEPESAGLLELLQAVLKARAAQEDIAPAMLGTTADLQALAEAKTNRATMDLPLL
KGWRKSLVGDLLLDVLDGKLAVKTDPLTGVVSWVRISTENRG
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atggcgatacaccccccctattacattgcgaacgccaaagcgttgcgcgagttctgcgag
cgattgcaggacagcccccggctcgcccttgataccgaattcgtcggcgaagacagtttc
gtgcccaagctcgagctgattcaggtcgccacggacgacgtcgccgcggtgatcgacttt
cccgccgttcaagccgacaacgcgctggatctcttctgggaaatcctctgcgacccggac
attgaaaaggtcgtgcacgcgggccggcaggatttggatctgttcgcggtccacgccggg
cgcatcccgaagccgtttttcgacacacagatcgccgccgcgatggtggggtacggggcg
caggtcgcctatgccagtcttgttcagcgggttcacggcgccaagctggacaaggcgcac
acgttcacgaattggagcgcccgtcctctgtcccatgatcaactggcctatgcgctcgac
gacgtgacctatctgctggcgatctatgatcatcttcgcgcgcggctctccaaattcggc
agacttgagtgggccgtcgaagaattttcccgtctggagtcggccgtcggagacatgcgg
cgggattctcacgcgcgctatcagcgggtgcgggggtgggacaccctcaagcccaagtcg
gcggccgtgctccgggccttggcggcttggcgggaagacgaggccaaacgccgcaacagc
ccgagaagccgggtgatgcgggacgaggtcttgcttcagttggcgcggcgtcccccgagc
acggttcaggaactgcggagcgtccgtggcatgcacgaatcggaagtcaaccgaaacggt
gagacgctgttggccgtcatcggcgcggcgttggcgctgccctcttccgagtggcctgag
gtcccgagagaacggaagcccgagccggaatcagccgggctgttggaattgctgcaggcg
gtgctcaaggcccgtgccgcgcaggaagacatcgctcccgccatgttgggaacgacggcc
gacttgcaggctttggccgaggcaaagacgaatcgcgcgacgatggatcttcctctgctc
aaggggtggcggaaatcgttggtcggtgatctgctccttgatgtgttggatggaaagctg
gccgtgaagaccgatccccttaccggagtggtgtcttgggtccggatatcgacggagaac
agagggtga
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