Candidatus Nitrospira inopinata: NITINOP_2363
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Entry
NITINOP_2363 CDS
T04169
Symbol
holB
Name
(GenBank) DNA polymerase III, delta' subunit
KO
K02341
DNA polymerase III subunit delta' [EC:
2.7.7.7
]
Organism
nio
Candidatus Nitrospira inopinata
Pathway
nio03030
DNA replication
nio03430
Mismatch repair
nio03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NITINOP_2363 (holB)
03430 Mismatch repair
NITINOP_2363 (holB)
03440 Homologous recombination
NITINOP_2363 (holB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nio03032
]
NITINOP_2363 (holB)
03400 DNA repair and recombination proteins [BR:
nio03400
]
NITINOP_2363 (holB)
Enzymes [BR:
nio01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NITINOP_2363 (holB)
DNA replication proteins [BR:
nio03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NITINOP_2363 (holB)
DNA repair and recombination proteins [BR:
nio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NITINOP_2363 (holB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_delta2
DNApol3-delta_C
Motif
Other DBs
NCBI-ProteinID:
CUQ67335
UniProt:
A0A0S4KSK4
LinkDB
All DBs
Position
1:complement(2306706..2307752)
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AA seq
348 aa
AA seq
DB search
MPFRDIIGHERSIAAIKSALRHGRLAHAYLFHGEAHIGKFLSAVRLAQALSCEDPDSIKD
LDSCGACRSCLQIAARTHPDYAVIEPDRELAVPQIKIEHIREIEQQLIYRPLIGEKKICI
IDDADRLTIGAANALLKTLEEPPSYGLFILISSRPMALPATIRSRCQSLRFLPPASAQVE
AALVLKRHLPPADAQFLALCCDGRIGEALAQDLDVLRAEQRECLALVDPSTLGSITAILS
AAETLAKDGRGGDVLNWLGRWIRDLILVLIGGDPKHLLHRDHLDKLAHYAKRADLDVLLE
LSAEIDRIEQQAARHPNMQMALETVLLRLRDALGPSRPPAPVSPMSRS
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgccgtttcgcgacatcatcggccatgaacggtccattgcggcgatcaagtcggcactg
aggcacggccgcctggcccacgcctatctcttccacggcgaagcccatatcggcaaattc
ctgagcgcggtccgtctcgcgcaggccttgagctgtgaagatcccgattcaatcaaggac
ctggacagttgcggcgcctgccgttcatgtctccagatcgccgcgcggacccatcctgat
tatgccgtgattgaacccgaccgcgaactggccgtcccgcagatcaagatcgagcacatt
cgggagatcgaacagcagttgatctaccgaccgctgatcggcgagaaaaaaatctgcatc
atcgacgacgccgaccgtctcacgatcggggcggccaacgcactgctcaaaacactggag
gagccgccgtcgtacggcctcttcatcctcatctccagccggcccatggcgctcccggcg
acgatccgctcgcgttgccagtcgttacggttcctaccgccggcctccgcccaagttgaa
gccgccttggtcctgaaacggcacctgcctcccgccgacgctcagtttctcgccctgtgc
tgcgacggccgcatcggggaagccctcgcgcaagacctcgacgtcctgcgcgccgaacag
cgggagtgcctggcgctcgtcgatccgtcaacgctgggctcgatcaccgccatcctttcg
gccgccgagacattggccaaggacggacgaggcggcgacgtcttgaactggctcggtcgc
tggattcgggatttgattctcgtactcatcggaggagacccgaagcaccttctccatcgc
gatcacctcgacaaactcgcgcactacgcaaagcgggccgacctcgacgtgttgctggaa
ctctcggccgagatcgaccggatcgaacagcaggcggcccgccatccgaacatgcagatg
gcgttggaaacggttcttctgcggctgcgcgacgcactcggcccctctcgcccgcccgct
cccgtctcgcctatgtcccgctcctag
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