Candidatus Nitrospira inopinata: NITINOP_3282
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Entry
NITINOP_3282 CDS
T04169
Symbol
ymfC
Name
(GenBank) 23S rRNA pseudouridine synthase
KO
K06181
23S rRNA pseudouridine2457 synthase [EC:
5.4.99.20
]
Organism
nio
Candidatus Nitrospira inopinata
Brite
KEGG Orthology (KO) [BR:
nio00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
nio03009
]
NITINOP_3282 (ymfC)
Enzymes [BR:
nio01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.20 23S rRNA pseudouridine2457 synthase
NITINOP_3282 (ymfC)
Ribosome biogenesis [BR:
nio03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
NITINOP_3282 (ymfC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
Motif
Other DBs
NCBI-ProteinID:
CUQ68254
UniProt:
A0A0S4KYK1
LinkDB
All DBs
Position
1:complement(3184128..3184748)
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AA seq
206 aa
AA seq
DB search
MQEYAIAFNKPYGVLSCFTDRDGRPTLADFISLPGVYAAGRLDRDSEGLLILTSDGAMAH
RITDPRHTLPKVYLAQVERMPDEEAIARLEEGVVLSGRQTRPAKVRLLTQEPEIAARPVP
IRFRKTVPTAWLEITIHEGMNRQVRRMTAAVGHPTLRLMRVAIGPVRLGDLMPGRWRALT
EEEIRAFGRFTDRRRRRRPSSPVPHS
NT seq
621 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaatacgccatcgccttcaataagccctacggcgtgttgtcgtgctttaccgat
cgcgacggtaggccgaccttggcggatttcatttcgttgcccggcgtctatgcggcgggg
aggcttgatcgcgatagtgaaggattgctgatcctcacgtccgacggggcgatggcgcat
cgaattaccgatccgagacatacgttgccgaaggtgtatttggcgcaggtcgaacggatg
cccgatgaggaggccattgcaaggctggaagagggggtcgtcctcagcgggcggcaaacc
agaccggcaaaagtcaggttgctgactcaagagcctgaaatagcggcgcgacctgtgccc
atcaggtttcgaaaaaccgtgccgaccgcttggctggagatcacgatccacgagggcatg
aaccgccaggttcgtcgcatgacggcggcggtgggacatccgacgttgcggctgatgcgt
gtcgccatcgggccggttcgacttggagacctcatgcccggtcgatggcgggccctgacc
gaagaggaaatcagggccttcggccggttcacggatcggcgacgtcggagacgaccgtcc
tcgcctgtgccccactcttga
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integrated database retrieval system
