Candidatus Nitrospira inopinata: NITINOP_3288
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Entry
NITINOP_3288 CDS
T04169
Symbol
recJ
Name
(GenBank) Single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
nio
Candidatus Nitrospira inopinata
Pathway
nio03410
Base excision repair
nio03430
Mismatch repair
nio03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
NITINOP_3288 (recJ)
03430 Mismatch repair
NITINOP_3288 (recJ)
03440 Homologous recombination
NITINOP_3288 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nio03400
]
NITINOP_3288 (recJ)
DNA repair and recombination proteins [BR:
nio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
NITINOP_3288 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
NITINOP_3288 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NITINOP_3288 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
CUQ68260
UniProt:
A0A0S4L0T2
LinkDB
All DBs
Position
1:complement(3189151..3190848)
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AA seq
565 aa
AA seq
DB search
MGSKLWVFRDIDLTRREALAQALAISSATASLLLARGVTTLDEAAAWMSPGIVHDPFLIP
DMDRAVDRLHQAMVNGERVCFYGDYDVDGMSATGIYLSFFQGLGANVSAYVPHRIREGYG
LNEGAVRRLASEGVTLLVTSDCGTTSHREIALANQLGLDVIVTDHHQTDGELPPAVAVMN
PHRRDARYPFHGLCSGGLAYKVACAYEARHGSGEVPTDALLDLVALSTIADVVPLQDENR
VFVREGLAQLSRGARCGIRALKLVSGLANDCTADAIAFKLAPRLNAAGRLDEGLKGVRLL
TTESEAEAKRLAEELDQLNRLRQRLESEIMRDATAAVEAGELPDAIVVASREWHMGVVGI
VASRLVERFHRPAVVIALDGRGIGKGSARTIPGFDLYQGLASCRDLLLAFGGHPSAAGVT
VHESRLSEFAGRFAAVAGRWAQAARRVPTLHLDSEVRLNEVTYRLLQEIGSLHPFGAGNP
EPMFAGRRLEITNARVVGEKHLKMTLRQEGSPPFDGIGFGMKSLETQGVSLRDLVDVAFT
PELNRWNGYDRIQLRIRDIRPSDGA
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atggggtccaaactctgggtctttcgcgatattgacctcacccgccgggaggccttggcc
caggctctggcaatttcctcggcgacggcttcgctgttgttggctcgaggcgtcacgacg
ttggacgaggccgccgcctggatgtctcccggcatcgtccatgatccctttttgattccg
gacatggatagagccgttgatcgccttcatcaggccatggtcaacggcgagcgggtgtgt
ttttatggtgattacgacgtcgacggcatgtcggcaacaggaatttatctctcgtttttt
caagggcttggggccaatgtctctgcttatgtgcctcatcgcattcgggaaggctatggt
ctcaatgagggggcggtgcgccggttggcgagtgaaggggtgacgttgctcgtgacgtcg
gactgtggcacgacatcgcatcgtgaaatcgcgttggcgaatcaattggggctcgacgtt
attgtgacggatcatcatcagacggacggggagttgcctcccgccgtggcggtgatgaac
ccccatcgtcgcgacgcgcggtatccgtttcacggattgtgttcgggcgggttggcctac
aaggtggcgtgcgcgtacgaagcccgtcacggaagcggggaggtgccgacggacgcgctt
ctggacttggtggcgctttcgaccatcgccgacgtcgttccgctgcaggacgagaatcgc
gtctttgtgcgcgagggattggcacaactgtcccgtggggcgcgctgcggaatccgagcc
ttgaagctggtgtccggtctggcgaacgactgcacggcggatgcgatcgcgttcaaactg
gcgccgagattgaatgcggccggacggttggatgaaggcctgaagggggttcggctgctg
accacggagtccgaagcggaggcgaagcggttggccgaggagcttgatcaattgaatcga
ctccgccagaggctggagtccgagatcatgcgggacgcgacggccgcggtggaagcgggt
gagctgcctgatgcgatcgtcgtggcttctcgggaatggcacatgggggtggtgggcatc
gttgcgtctcgtctcgtggaacggtttcataggccggccgtggtgatcgctctcgatggg
cgggggatcggcaagggatcggcccgcaccatccccggattcgatctgtatcaagggttg
gcttcttgccgtgacctgctcctggcgttcggcggacaccccagcgcggcgggagtgacg
gtgcatgagagccgattgtccgaattcgccggacgctttgcggcggtcgcgggccggtgg
gcgcaagccgcgcgccgtgtcccgacgctgcatctcgactccgaggtgcggttgaacgag
gtgacctatcggttactccaagagatcggttcgttgcatccgttcggggccggcaatccc
gaaccgatgttcgcgggaagacggctcgaaatcacaaacgctcgggtggtgggagagaaa
catctgaagatgacgctacgccaggagggatcgccgccttttgatggaatcggctttggg
atgaaatctctggaaactcagggggtgtctctgagagatcttgtggacgtggcgttcacg
ccggagttgaatcgctggaacgggtatgaccggattcagttgcggatccgcgatatacgg
ccgtcggatggagcatag
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