Nitrosopumilus sp. K4: NsoK4_01020
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Entry
NsoK4_01020 CDS
T07707
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nip
Nitrosopumilus sp. K4
Brite
KEGG Orthology (KO) [BR:
nip00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nip03016
]
NsoK4_01020
Enzymes [BR:
nip01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
NsoK4_01020
Transfer RNA biogenesis [BR:
nip03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
NsoK4_01020
Prokaryotic type
tRNA splicing ligases
NsoK4_01020
BRITE hierarchy
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Paralog
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GFIT
Motif
Pfam:
RtcB
GAPS4b_N
DUF3492
Complex1_LYR
Motif
Other DBs
NCBI-ProteinID:
QUC64896
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All DBs
Position
186497..187945
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AA seq
482 aa
AA seq
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MSSITPKKIAENQYLIEADSNLGMKVPVKIYANESLLQKMLTDRTIMQARNVASIPGIVS
HGVVLPDGHEGYGFPVGGVAAMDAEEGMISPGGVGYDINCGVRLLRSNLNEDTVRSKLKD
IVTDLFSSIPSGVGSKGAVKLSHSQLDEVLVNGVNWAIDNGYGSSNDADVCEENGQIANA
DPNKVSDKARKRGAPQLGSLGSGNHFLEIQKVAEIHDEEAAKRMGITEGTITVLIHCGSR
GFGHQVCSDYLRVSEQALEKYDIHLADRELACVPNNSDEGDAYRKAMFAALNFAWSNRQM
ITHWTRKSFERVFGQSESDLDMKLVYDVAHNIAKVEKHKVDGKERNLVVHRKGATRAFPA
NRDEVPTKYRDIGQPVLIPGSMGTASWILLGQPNSMELSFGSTAHGAGRTMSRSKARKNY
SESDVKKSLNDKGIFIKALTRDGVVEETPQAYKDVDAVVNVSHNLGIATKVAKLVPIGVI
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaataactccaaaaaaaattgctgaaaatcagtacctaattgaggctgactct
aatcttggaatgaaggttcctgtcaaaatctatgcaaatgagagtctgttgcaaaaaatg
cttactgataggaccataatgcaggctcgaaacgttgcatcaattcctggtattgtgagc
catggtgtggttttgcctgatggtcatgaaggatatggttttccagttggcggcgttgca
gcaatggatgctgaagagggcatgattagtcctggaggagttggatatgacatcaattgt
ggtgtaaggctacttcgaagcaatcttaacgaagatactgttcgctcaaaactaaaagat
attgtaactgatttgtttagttctattccttccggagttggctccaaaggcgcagtaaaa
ttatctcactctcaattagatgaagtcttggtcaatggcgttaactgggcaattgataat
ggatatggttcatcaaatgatgcagatgtctgtgaagaaaacggacaaattgcaaatgca
gatcctaacaaagtttcagataaggcaagaaagcgaggtgcccctcaacttggaagtctt
ggatctggaaatcactttcttgaaattcaaaaggttgcagagattcatgatgaagaagct
gcaaaaagaatgggaataactgaaggaacaattacagttttgattcattgcggttcaaga
ggatttggccaccaagtctgtagtgactaccttagagtttcagaacaggccttggaaaaa
tatgatattcatttagcagatagagaactggcatgtgttccaaacaattctgatgaaggt
gatgcttacagaaaagcaatgtttgctgcattaaactttgcatggagtaaccgacagatg
attacccattggacaagaaaatcatttgagagagtatttggccaaagtgaatctgatctt
gatatgaaactagtttatgatgttgcacacaatattgccaaagttgaaaaacacaaagtc
gatggaaaagaacgaaatcttgtggttcatagaaaaggtgccacacgagcatttcccgca
aaccgcgatgaggtaccgacaaaatatcgtgacattggtcaacccgtacttattccagga
tctatgggaactgcaagctggattctacttggacagccaaattcaatggaacttagtttt
ggctctactgcacatggagcaggaaggaccatgtcaagatccaaagcaagaaagaattac
tcagaaagtgatgtcaaaaagtcactaaatgacaagggtattttcatcaaagcattaact
cgtgacggtgtggtagaagagactcctcaggcatacaaagatgtagatgctgtagtcaat
gtatcacataatttaggaatagccacaaaagtagcaaaattagtgcctataggtgtgata
aagggttga
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