Nitrosopumilus sp. K4: NsoK4_02020
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Entry
NsoK4_02020 CDS
T07707
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nip
Nitrosopumilus sp. K4
Pathway
nip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NsoK4_02020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nip03019
]
NsoK4_02020
03009 Ribosome biogenesis [BR:
nip03009
]
NsoK4_02020
Enzymes [BR:
nip01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
NsoK4_02020
Messenger RNA biogenesis [BR:
nip03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
NsoK4_02020
Ribosome biogenesis [BR:
nip03009
]
Prokaryotic type
rRNA helicases
NsoK4_02020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
Helicase_C_2
AAA_30
CMS1
Flavi_DEAD
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QUC65071
UniProt:
A0A8B2HS93
LinkDB
All DBs
Position
complement(347851..349167)
Genome browser
AA seq
438 aa
AA seq
DB search
MTKFQDLGLKEEILKGLEELGFQEAFPIQEAVIPVLLTGRDVVGQAHTGSGKTAAFSLSM
LQEIQPKKGIQGLVMAPTRELAMQITEEIKKFGKHTGIKVATVYGGQGMGLQLDALERGV
EIVVATPGRLIDHLKRGSIELRDISHIVLDEADTMLDMGFIDDIQFILDLAPEDRVMSLF
SATMPTEILRLSEEYLKNPKQFLLDADDLSGEGIDQGYLVIKDRDKSKYLVDFIKQTKGQ
CIVFCSTKYRTRDVAKFLHQEKFDAVAIEGDMSQHRREQSMAKFRSGKADILVATDVASR
GIDVPRVELVINYDVPNQEMAYFHRIGRTARAGAKGKAITFVSYSSVGDWNLIKRQIKVS
LTDLNKEMGIEISIPDPLKRQVPSRRFGGQSRSGYSRGGRSGRYGSSDRGDPRDERRGRR
KYSDRGGGRNRYGGRSRW
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaatttcaagatttaggattaaaagaagaaatactgaaggggttagaagagttg
ggattccaagaagcttttcccatccaagaagcagtaattccagttttacttacaggtaga
gacgtagtaggtcaagctcacacaggttctggaaaaacagctgcattttcattatcaatg
ttacaggagattcaaccaaaaaaagggattcaaggacttgtaatggctccaacgagagaa
ctcgcaatgcaaattactgaggagataaagaaatttggaaaacacacaggaatcaaagta
gcaacagtttacgggggtcaaggaatgggccttcaattagatgcattagaaagaggagta
gagattgtcgttgccacacctggaagattaatagatcatctgaagagaggttcaattgag
ctaagagatatttcccatatcgtgctagacgaagcagacactatgctagacatgggattc
atagacgatattcagttcattttagatttagcacctgaagacagggttatgtcattattt
tcagcaacaatgccaacagagatcctcagattatctgaagaatatttgaaaaatccaaaa
caatttttgcttgatgcagatgatcttagcggcgaaggaatcgaccaagggtatctagtg
attaaggacagagacaaatcaaaatatttagtggattttattaaacagacaaaaggacaa
tgcattgtattttgttcaacaaagtatcgaacaagagatgttgcaaaattccttcatcaa
gagaaatttgatgcagtggcaatagaaggagacatgtcacagcacagaagagagcaatca
atggctaaatttagaagtggaaaggcagacatcctagttgcaacagatgttgcatcaaga
ggaatagatgttccaagagtagagcttgtaattaattacgatgtacctaatcaagaaatg
gcatactttcacagaattggaagaactgccagagcaggggcaaaaggcaaagcaatcaca
tttgtatcatattcatcagtaggagattggaatttaatcaaacgtcaaatcaaagttagt
ttgactgatttaaacaaagagatgggaattgaaatttcaatcccagatcctctaaagaga
caagtcccatctagaaggtttggaggtcaatcaagatcaggttactctagaggaggacgt
tcaggcagatatggtagttcagacagaggagatccaagagatgaaagaagaggaagaaga
aaatacagtgaccgtggtggtggaagaaaccgatacggcggtcgcagtagatggtaa
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