Nitrosopumilus sp. K4: NsoK4_04450
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Entry
NsoK4_04450 CDS
T07707
Name
(GenBank) CDC48 family AAA ATPase
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
nip
Nitrosopumilus sp. K4
Pathway
nip04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
nip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
NsoK4_04450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nip03019
]
NsoK4_04450
03009 Ribosome biogenesis [BR:
nip03009
]
NsoK4_04450
04131 Membrane trafficking [BR:
nip04131
]
NsoK4_04450
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nip04147
]
NsoK4_04450
Messenger RNA biogenesis [BR:
nip03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
NsoK4_04450
Ribosome biogenesis [BR:
nip03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
NsoK4_04450
Membrane trafficking [BR:
nip04131
]
SNARE
SNARE associated proteins
Others
NsoK4_04450
Autophagy
Aggrephagy
Other aggrephagy associated proteins
NsoK4_04450
Exosome [BR:
nip04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
NsoK4_04450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
AAA_5
CDC48_2
TIP49
AAA_14
AAA_22
nSTAND3
AAA_lid_PRS2_C
Mg_chelatase
AAA_33
AAA_7
RNA_helicase
DUF815
IstB_IS21
NPHP3_N
AAA_24
AAA_28
Sigma54_activat
Parvo_NS1
AAA_25
ABC_tran
DUF5906
AAA_3
Zeta_toxin
AAA_17
PhoH
AAA_18
AAA_30
AAA_11
AAA_19
SLFN-g3_helicase
ATPase
KAP_NTPase
Vps4_C
Zw10_N
Motif
Other DBs
NCBI-ProteinID:
QUC65676
LinkDB
All DBs
Position
741736..743856
Genome browser
AA seq
706 aa
AA seq
DB search
MSEIELKIEEMPQAYVGKGMAIVDPKIIEENNWKPGQILELSANKKSHVKLWSGFPEDYD
SKTIRIDGLTRYNIGASIGENLSINAVEGVEAEQIVLSPIEKIHAEGLHEYMSSLYQGHV
FTTGDTVIVNTQMGSKIQLVVTSTKPAKPVFVTDDTIFKLGNITKLDDPSIPRITYDELG
GLKNEILKIREMVELPMRHPELFEKIGISSPKGVLLYGPPGTGKTLLAKAVAGETNSHFT
SLSGPEIMAKHYGESEEKLREIFTQAEENAPSIIFIDEIDSIAPKREEVSGELEKRIVSQ
LLTLMDGMKSRGKVVVIAATNRPDSIDPALRRPGRFDREIEIGIPDEEGRLEILNIHTRG
MPLDKNVVLEKISKITHGFVGADLEVLCKEAAMRSLRRILPEINLEEEKVSKEVLQKIMI
TSEDFTDALKEVRPSALREVLVQIPNVSWDDVGGLDKLKEELREAIEWPLKYKEAFEYAH
IKPPKGVLLYGPPGTGKTLIAKAVATTTESNFISIKGPELLSKWVGESEKGVREIFRKAR
MAAPCIIFFDEIDALVPKRGSGNSDSHVTENVVSQILTEIDGLEELNNVLIIGATNRRDI
VDPALLRPGRFDRVIEVPNPDVAGIEMILKIHTKDKPLAEDVNLKTLAEMSKGFSGAEIE
EVCNRGALLGVKRFVENKEKDVKSIKITQKDLEYSINEIKKTKSSS
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
ctgtcagaaattgaactaaaaatcgaagagatgccacaggcctatgttggtaagggaatg
gctatcgttgatccaaaaataattgaagagaataactggaaaccgggacaaattctagaa
ctgtctgcaaataaaaaaagtcatgtaaaactatggtctggatttccagaagattatgac
agtaaaactattcgtatagatggtctcaccagatacaatataggggcaagtattggtgag
aatctttccattaatgcagttgagggagtagaagcagaacaaattgtgttgtcccctatt
gaaaagattcatgccgaggggttacatgagtacatgtcttcactttatcaaggccatgtt
ttcaccacaggtgacacagtaatagtcaatactcaaatgggaagtaagattcagcttgtg
gtaactagcacaaaacccgcaaagcctgtttttgtaaccgatgatacaatattcaagtta
ggcaacattacaaaattagatgatccttccataccaagaattacctatgacgagttgggc
ggattaaaaaatgagattctaaagatacgtgaaatggtagagttgccaatgagacatcca
gaattgtttgagaaaataggcatatcctcacctaaaggtgtcttgttgtatggccctccc
ggaacaggaaaaacattacttgcaaaggcagttgcaggtgagacaaattcccactttaca
tcacttagcggtccagaaatcatggcaaagcattatggtgaaagcgaggaaaaactacga
gaaatttttacacaggctgaggagaacgctcctagcattatattcattgatgaaattgat
tcaattgctccaaaaagagaggaggtttcaggagaattggaaaaacggattgtatcacaa
ttactgaccctgatggatggaatgaaatctcgaggaaaagttgtagttattgctgcaact
aatagaccagatagcatagatcctgcactacgaagaccaggcagatttgacagagagatt
gaaatcggaattcctgatgaagagggaagattagaaattttaaacatccacacacgtgga
atgcctctagacaaaaatgtggttctagaaaaaatttctaaaataactcacggatttgtg
ggggctgacctggaagttctgtgtaaggaggcagcaatgagatcccttagaagaatttta
cctgagattaatttggaagaagaaaaagtttcaaaggaagtactgcaaaaaataatgata
actagtgaagattttactgatgcgttaaaagaagtcaggccttctgcattaagggaagtt
ctagttcagattccaaatgtaagttgggatgatgtaggggggctggacaaactaaaggaa
gaacttcgtgaagcaatagaatggccattaaaatacaaagaggcttttgaatatgcgcat
ataaaaccgccaaagggagtactgctttacggtcctccgggaacaggaaaaacactaatt
gcaaaggcagttgcgacaacaactgaatccaattttatcagcatcaagggtcctgaactg
ctatccaaatgggttggtgaatctgaaaagggagtaagagaaattttcagaaaagcacgt
atggctgccccatgcataattttctttgatgaaatagatgcgcttgttccaaaaagagga
agcggtaattcagattcacatgtcacagaaaatgtcgtctcccaaattctaactgagata
gatgggttggaggagctcaataacgtattgataattggtgcaacaaacaggcgggacatt
gtggatcctgcactacttaggcctggcagatttgatagggtaatagaagttccaaaccct
gatgttgcaggaatagaaatgattctcaagattcacaccaaagacaaaccacttgcagag
gatgtcaatctaaagaccctggcagaaatgtcaaagggattcagtggggcagaaattgaa
gaggtgtgcaatcgtggagcactcttgggagttaagagatttgtggaaaacaaggaaaaa
gacgtaaagtctatcaaaataactcaaaaggatctagaatactcaataaacgaaataaag
aagacaaaatcttcatcctga
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