Nitrosopumilus sp. K4: NsoK4_08360
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Entry
NsoK4_08360 CDS
T07707
Name
(GenBank) exosome complex RNA-binding protein Csl4
KO
K07573
exosome complex component CSL4
Organism
nip
Nitrosopumilus sp. K4
Pathway
nip03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nip00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NsoK4_08360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nip03019
]
NsoK4_08360
Messenger RNA biogenesis [BR:
nip03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NsoK4_08360
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
NsoK4_08360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
Prok-RING_1
Motif
Other DBs
NCBI-ProteinID:
QUC64425
LinkDB
All DBs
Position
1372806..1373357
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AA seq
183 aa
AA seq
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MSESTIFPGDKIASIEEYEAGYNTFDDGDMVRAATVGEKDIDKQTRVANIKHPKTLSIPK
TGDTVIGTVAAVMSSMIAVSIDYINGKPTTSKVECVCGTRNIRKKNIALVNDIVTLKIVN
HLNGTIHATIDEPQLGVLFTKCRKCGGKVVPMRDAIKCTECSWIDERKLSTNFGNGDFVK
LRE
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atgtcagagtcaaccatttttccaggtgataaaatagcatctattgaagaatatgaggca
ggctacaatacatttgatgatggggatatggtcagagctgccacagtaggagaaaaagac
atcgataaacaaaccagggttgcaaacattaaacatcctaaaacactttcaattccaaaa
acaggagatacagtgattggtacagtagcagcagtgatgtcgtctatgattgcagtttca
attgattatattaatggaaaaccaaccacatcaaaagttgaatgtgtatgtggtacaaga
aacataagaaaaaagaacattgcattagtaaacgatattgttactttgaaaatagtaaat
catcttaatggaacaattcatgctacaatagatgaaccacagttgggagtacttttcaca
aaatgtagaaaatgtggaggaaaagtagttccaatgcgtgatgcaatcaaatgtaccgaa
tgctcatggattgatgaaagaaaactttcaacaaattttggcaatggtgatttcgtaaaa
cttagagaataa
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