Nymphalis io (European peacock): 126770352
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Entry
126770352 CDS
T08495
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
niq
Nymphalis io (European peacock)
Brite
KEGG Orthology (KO) [BR:
niq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
niq03016
]
126770352
Enzymes [BR:
niq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
126770352
Transfer RNA biogenesis [BR:
niq03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
126770352
Prokaryotic type
tRNA splicing ligases
126770352
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
126770352
NCBI-ProteinID:
XP_050345693
LinkDB
All DBs
Position
8:complement(7064605..7068088)
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AA seq
506 aa
AA seq
DB search
MVVRQYNEELKYLEKINPHCWKIKKGFQPNMNVEGVFYVNNTLEKLMLDELRNSCRPGMT
GGFLPGVKQIANVAALPGIVGRSVGLPDIHSGYGFAIGNMAAFDTSNPKSIVSPGGVGFD
INCGVRLLRTNLHEKDVQPIKEQLAQSLFDHIPVGVGSKGIIPMNARDLEEALEMGMDWS
LREGYVWAEDKEHCEEYGRMLNADPSKVSLRAKKRGLPQLGTLGAGNHYAEIQVVDEIYD
KFAAGKMGLERIGQVCVMIHSGSRGFGHQVATDALVQMEKAMKRDQIEVNDRQLACARIN
SVEGQDYLKAMAAASNFAWVNRSSMTFLTRQAFSKQFKLAPDDLDMHVIYDVSHNVAKIE
EHIVDGKVKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGSMGTCSYVLTGTHQGM
TETFGSTCHGAGRALSRAKSRRNIDYKDVLNKLEGMGISIRVASPKLVMEEAPESYKNVT
DVVNTCHSAGISKKTVKLRPIAVIKG
NT seq
1521 nt
NT seq
+upstream
nt +downstream
nt
atggttgtcaggcaatataatgaagaattaaaatatttagaaaaaataaatccacattgt
tggaaaattaagaaaggctttcaacctaatatgaacgttgaaggcgttttttacgttaat
aatacgttagaaaagctcatgttagacgaattaaggaattcttgccggcctggcatgacg
ggaggatttcttcctggagtcaagcaaatagcaaatgtagctgcattgccaggaattgtt
gggcgatctgtcggtcttccggatatacattcaggatatggatttgctattggtaatatg
gctgcttttgatacatctaatcctaagtcaattgtgtctcctggaggtgtaggttttgat
ataaattgtggtgtccgccttttaagaactaatttacatgaaaaagatgttcagccaatt
aaggaacaattagcccaaagcttatttgatcatattcctgttggagtgggctctaaaggt
atcatacccatgaatgctagagatttagaagaagctttagaaatgggtatggactggtct
ctaagggaagggtatgtatgggctgaagataaagaacactgtgaagaatatggtcgcatg
cttaatgccgatccatccaaagtgagcttaagggcaaagaaacgaggactgccacaatta
ggaactcttggagctggtaatcactatgctgaaatacaagttgttgacgaaatttacgat
aaatttgctgctggtaagatgggcttagaaagaattggccaagtatgtgtaatgatacac
tcaggaagtagaggatttggtcatcaagtagcaacagatgcacttgtgcaaatggagaag
gccatgaaaagagatcaaattgaagttaatgatcgtcaactggcctgtgcaaggataaat
tctgttgaaggtcaagattatttaaaagctatggcagcagcatctaactttgcatgggtc
aaccgtagttcaatgacatttcttacacgtcaagcattttcaaaacaatttaaactggct
cctgatgatttagatatgcatgttatatatgatgtttctcataatgtagccaaaatagaa
gaacatattgttgatggtaaagtaaaaactttacttgttcatagaaagggatccacaaga
gcatttcctcctcatcacccactgataccagtggattaccaattgactgggcaacctgta
ttaattggaggatctatgggcacatgtagttatgtgctaacaggtactcaccagggtatg
acagaaacttttggatccacatgtcacggagctggccgcgctctctctcgcgccaaatct
aggcgaaatattgattacaaggatgtattaaataagttagaaggtatgggaatttctata
agagtagcctcaccaaaattagtaatggaagaagctccagaatcttacaagaatgtgact
gatgttgtaaacacttgtcattctgctggcatcagtaaaaaaactgttaaattacgtcct
attgctgtaattaagggttaa
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