Nymphalis io (European peacock): 126773124
Help
Entry
126773124 CDS
T08495
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
niq
Nymphalis io (European peacock)
Pathway
niq03013
Nucleocytoplasmic transport
niq03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
niq00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126773124
03015 mRNA surveillance pathway
126773124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
niq03019
]
126773124
Enzymes [BR:
niq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
126773124
5.6.2.5 RNA 5'-3' helicase
126773124
Messenger RNA biogenesis [BR:
niq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
126773124
mRNA cycle factors
Common to processing body (P body) and stress granule
126773124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
ATPase
UvrD-helicase
Helicase_RecD
AAA_16
NPHP3_N
AAA_22
SRP54
nSTAND3
AAA_5
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
126773124
NCBI-ProteinID:
XP_050349703
LinkDB
All DBs
Position
14:165268..172856
Genome browser
AA seq
1033 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFEFTDFTLPSQSQTQASQHDHGLTSSNQ
VNGLGRTDLNSKLSSVGNTIAELQFEEEDEALYSSKELPDHACKYCGIHDPATVVMCNIC
NKWFCNGRGNTSGSHIINHLVRAKHKEAALHRDGPLGETLLECYSCGARNVFVLGFIPAK
ADSVVVLLCRQPCAAQSSLKDMNWDQEQWKPLISDRAFLSWLVKVPSEAEQMRARQVTPQ
QIGRLEELWRDNVDATFQDLEKPGVDEEPHQVLLRYEDGYQYQNIFGPLVKLEADYDKRL
KESQTQEGIEVRWDVGLNKKTIAYFTLAKTDSDMKLMHGDELRLRYVGELHKAWSGVGHV
IKVPDNYGDDVGLELKSGAGAPLDCTSNFVVDFIWKSTSFDRMQLALRKFAVDDSSVSGY
IYRRLLGHEVEEVLFRVHLPKHFSAPNLPDLNRSQVYAVKHALQRPLSLIQGPPGTGKTV
TSATIVYQLVRQNGGPVLVCAPSNTAVDQLTEKIHRTGLKVVRLCAKSREAMESSVSFLA
LHEQARALGSADSELRKLTRLKEEAGELSAADERRYRALRRAAERRLLDAADVVCTTCVG
AGDPRVARMRFQSILIDEGMQSTEPECMVPVVLGARQLILVGDHCQLGPVVMCKKAAKAG
LSQSLFERLVVLGIRPFRLEVQYRMHPELSRFPSDFFYEGSLQNGVSAEERRLHKIDFPW
PRPDRPMFFYVTQGQEEIAGSGTSYLNRTEAANVEKLTTRFLKAGVRPEQIGIITPYEGQ
RSYLVQHMQYQGSLHAKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLSDPRRL
NVALTRAKYGLIVVGNPKVLSKQPLWNHLLAFYKERRVLTEGPLSNLKESAIQFAKPKKL
VNAHNPGSHFMSTSMFDAREAMVPGSVYDRARPPRDPLAAVRPERAERAPVPSAAFPAPR
LRPPAEPPRARRRPPRLSQEPLSQQPPLSLSQGASQPDFSQESAAPDCPSQPDGLLSQDS
TYQGGFRARAGQY
NT seq
3102 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgacgcgtatggtccaagttctcaaacgttgacatttttagacacagaggaa
gcagatcttatcggtgctgatacccaaggatcggaatttgaatttactgatttcactctt
ccgtcgcaaagccaaacacaagcatcccaacacgatcatggactaacatcatccaaccaa
gtgaatggccttggacggacagatcttaactcgaaactttcaagtgtagggaatactata
gcggaattgcaatttgaggaagaggatgaagcactgtacagtagcaaggaactaccagat
catgcatgcaaatattgtggtattcacgaccctgcaaccgttgttatgtgcaatatatgt
aacaaatggttttgtaatggacgaggtaatacctctggatcacacataattaaccatcta
gtaagagcgaaacacaaggaagcagcgttgcaccgtgatggacctctcggagaaacatta
ctggaatgctattcatgtggtgctcggaatgtttttgttcttggctttatacctgccaag
gctgattcagttgtcgtacttctgtgtcgtcaaccctgtgccgcgcaaagttctcttaaa
gatatgaattgggatcaagaacaatggaaaccattaatttctgatcgtgcatttctatcg
tggcttgtgaaagtaccatcagaagcagaacaaatgagagcccgtcaagtaacacctcag
caaataggacgcctcgaagaactttggcgtgacaatgtcgatgctactttccaagattta
gaaaagcctggagtagatgaggaaccgcatcaggttctgttaagatatgaagatggatat
caatatcagaatatcttcggtccacttgtaaaattagaagctgattatgataagagactc
aaggaatcacaaacacaagaaggaatagaggttcgttgggatgttggtctcaataaaaaa
acaattgcatactttacgctagccaagaccgatagcgacatgaagctcatgcatggagac
gaactgagactgagatatgttggtgagctccacaaagcctggtcaggtgttggtcatgtg
atcaaagtgcctgataattatggagacgatgttggtctggagctgaaaagtggagctgga
gctcctcttgactgtacttcgaattttgtagttgattttatctggaaaagtacatctttt
gacaggatgcagttggctctccgcaagtttgcagtggacgattcgtcggtttccggctac
atataccgccgcctgttagggcacgaagtggaggaagtcctgtttcgcgttcatctgccg
aaacactttagtgcgccgaacctacctgacctgaacaggtctcaggtatatgctgtcaaa
catgctcttcaacgtcctctttccttgatccaaggccctccgggaacaggcaaaaccgtc
acttcggcgaccattgtgtatcaactcgttcggcaaaacggcggcccagtactggtttgt
gcgccgtctaatactgctgtagaccaactcactgagaaaatacatagaactggacttaaa
gtagtccgtctttgcgcaaaatctagagaagcaatggagtcttctgtgtccttcttggca
ctgcacgaacaggcacgtgccttgggttcggccgacagcgagttacgcaagttgacgagg
ttgaaagaagaagctggcgagttatctgccgccgatgagagacgctatcgagcccttcgt
cgagctgcagagagacgactcttggatgctgctgacgtggtttgcaccacatgtgtcggg
gcaggcgatccgagagtagctcgaatgcgtttccaatcaatcctcatagacgaaggcatg
cagtctactgagcccgaatgtatggtaccggtggtgctgggagcgaggcaactgattctt
gtcggcgatcattgtcagttggggcccgtcgtaatgtgcaagaaagccgccaaggcgggc
ctgagccagagtctgttcgagcgacttgtggtccttggcattcgtccttttaggttagag
gtacagtatcgtatgcatcctgaactgtcacggtttccgtcggatttcttttacgaaggt
tctcttcagaatggagtgagtgcagaagaaagacgtttacacaaaatcgattttccttgg
ccgcgaccagatagaccgatgttcttttatgtcactcaaggacaggaggagatagccggc
tcgggaacgtcttacttaaatcggacggaagcggccaacgtagaaaagcttacgacccgc
tttttaaaagccggcgtccggcccgaacagatcggtatcataacgccgtacgagggacag
cgatcgtatctcgtgcaacatatgcagtaccagggcagcttgcacgccaaactctaccag
gagatcgaagtggccagcgtggacgcctttcagggccgagaaaaagacatcatcatcatg
tcctgcgtccgctcgaacgaacaccagggcatagggttcctgagcgacccgcgtcgactg
aacgtcgccctgacgcgggccaagtacggcctcatcgtagtcggcaacccgaaggtcctc
agcaagcagcccctttggaaccacctgctcgccttctacaaggagcgccgcgtgctcacc
gagggcccgctgtcgaacctcaaggagtccgccatccagttcgccaagcccaagaagctg
gtgaacgcgcacaaccccggctcgcacttcatgtccacgtcgatgttcgacgcgcgcgag
gccatggtgccgggctcggtgtacgaccgcgcgcggccgccgcgcgacccgctggccgcc
gtgcgccccgagcgcgccgagcgcgcgcccgtgccgagcgccgccttccccgcgccgcgc
ctgcgcccgcccgccgagccgccgcgcgcgcgccgccgcccgccgcgcctgtcgcaggag
ccgctgtcgcagcagccgccgctgtcgctgtcgcagggcgcctcgcagcccgacttcagc
caggagtcggccgcgcccgactgcccgtcgcagcccgacggccttctgtcgcaggactcc
acgtaccagggcggcttccgcgcgcgcgccggccagtactga
DBGET
integrated database retrieval system
