Nymphalis io (European peacock): 126776112
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Entry
126776112 CDS
T08495
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
niq
Nymphalis io (European peacock)
Pathway
niq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
niq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126776112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
niq03019
]
126776112
03041 Spliceosome [BR:
niq03041
]
126776112
03009 Ribosome biogenesis [BR:
niq03009
]
126776112
03016 Transfer RNA biogenesis [BR:
niq03016
]
126776112
Enzymes [BR:
niq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126776112
Messenger RNA biogenesis [BR:
niq03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
126776112
Spliceosome [BR:
niq03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
126776112
Complex C
U4/U6.U5 tri-SnRNP related factors
126776112
Ribosome biogenesis [BR:
niq03009
]
Eukaryotic type
Pre-60S particles
Helicases
126776112
Transfer RNA biogenesis [BR:
niq03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
126776112
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
126776112
NCBI-ProteinID:
XP_050354399
LinkDB
All DBs
Position
1:complement(10909367..10922399)
Genome browser
AA seq
1027 aa
AA seq
DB search
MADVNSLFDCFDDPILSEATTQLPNLESKEKTTNDENESSSTKRPHEEVEYADTKKPKQE
EAEEDLMSDINVEMLSSRIVIHTLETHEGCTHEVAIPPNHQYAPLTQPASEPAKQYSFIL
DPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYR
EFSEEFHDVGLITGDVTINPSASCLIMTTEILRNMLYRGSEIMREVGWVVFDEIHYMRDK
ERGVVWEETLILLPDNVHYVFLSATIPNARQFAEWVCRLHSQPCHVVYTEYRPTPLQHYI
FPAGGDGIHLVVDEKGLFKEDNFNTAMTVLSNAGEAGKGDQRGRKGGLRGNNNTNIFNIV
KMIMERNFAPVIIFSFSKKDCELYAMQMAKLDFNTIEEKKLVDEVFNNAMDVLSEEDRKL
PQVENVIPLLRRGIGIHHGGLLPILKETIEILFGLGLIKALFATETFAMGLNMPARTVVF
TNCQKFDGKDFRFITSGEYIQMSGRAGRRGLDDKGIVILMIDQKVTPSIVKSMVQGKADP
INSAFHLTYNMVLNLLRVEEINPEYMLERSFFQFQNQAAIPDLIDKMKAKQKELDRVSVS
DEHAVAAYCGTRAQLDLLGAQFRSFITRPDYLKPFLQPGRLVKVKTEKYEYDWGIIVNFR
HKTGKGKKPQDENPLTADTVIIVDILLHVKKSKPEDSDTNMPCPPGETGDVEVVPVLHTL
IYQISSLRVYYPKDLRPPDNRKSVLKTIGEVKKRFPEGPPLLNPIKDMKIEDPVFKECVD
RIKILEERLYSHPLHKDKNRGALTAAYENKQEIYEELMSVKSELTKAKSILQMDELKKRK
RVLRRLGYCTLSDVIELKGRIACELSSADELLLTELIFNGVFNSLSAAQSAALVSCFVCD
ESAAQAAAAADELRAVLRQLQEYARRIAKVSIEAKMDLDEDEYVGKFKCTLMDVVLAWAN
GASFLQICKMTDVFEGSIIRCMRRLEEVLRQLCQAAKNIGNTDLENKFSDAIKMLKRDIV
FAASLYM
NT seq
3084 nt
NT seq
+upstream
nt +downstream
nt
atggctgacgtaaatagtttatttgattgttttgacgatccaatactaagtgaagctact
acacaattacctaatctagaaagcaaggaaaaaacgacaaatgatgaaaacgagtcttct
agtacaaaacgtccacacgaagaagttgaatatgcggacaccaaaaaaccaaaacaagag
gaggctgaagaagacctaatgagtgatataaatgtggagatgttaagctcgagaattgta
atacacactctagagactcatgaaggttgtacacatgaagtcgctataccccccaatcat
cagtatgcgcctttaacacaacccgcaagtgagcctgctaagcaatatagctttattctt
gatcctttccaaaaggaagcaattttgtgtattgacaatttacaatctgtcttggtgtca
gctcatacatctgctggaaaaactgttgttgcagagtatgcaattgcattatcattaaaa
aataaacaaagagtgatatacacaacaccaattaaggctctttccaatcagaagtaccga
gagttttcagaggaattccatgatgtcggtctaataaccggagatgtcactatcaatcca
tctgcatcgtgtcttattatgaccacagagattttaagaaatatgttgtacagaggatca
gaaattatgcgtgaagttggttgggtagtgtttgatgagattcattatatgagagacaaa
gagagaggtgttgtatgggaagaaactctaattttgttacctgataatgttcactacgtg
tttttgtcggctacaatccccaatgcgaggcaatttgccgagtgggtgtgtcgtttgcat
tctcaaccgtgtcacgtggtttataccgagtacagaccgactccgcttcaacactatata
ttcccagcgggaggggacggtatacatctcgttgtggatgaaaaaggtctgttcaaagaa
gacaacttcaacaccgccatgacagtgctcagcaacgcgggcgaagcgggcaagggtgac
cagcgcgggcggaagggcggcctaagggggaacaacaacaccaacatatttaatatagtc
aagatgattatggagaggaacttcgctcccgtcattatattcagtttcagtaaaaaggac
tgtgaactgtacgccatgcagatggcaaaattggattttaatacaatcgaagaaaaaaaa
ctagttgacgaagtattcaacaatgcgatggatgtgctgtcggaggaggatcgcaaactg
ccgcaagtagagaatgtgataccgttgctaaggcgcggcattggtatacatcatggcggt
ctgctgcctatactgaaggaaactattgagatattgttcggcttagggctcataaaggcg
ttgtttgcaacggaaacatttgcgatgggattgaacatgcctgctagaacagtcgtcttt
acaaattgtcaaaagtttgatggcaaggactttcgatttataacatcgggagagtatatt
cagatgtccggtcgcgcaggtcgacgtggtctggacgacaagggtatcgtgatcctcatg
atcgatcagaaggttacacccagcatcgtcaagtccatggtgcagggcaaggcagacccc
atcaactccgccttccatcttacttacaacatggtcttgaacttactgcgtgtggaagaa
atcaatccggaatatatgttggagagaagtttcttccaatttcaaaatcaagcagcgatt
ccagatttaatagataagatgaaggcgaagcagaaggagctggatcgcgtgtcggtgtcg
gacgagcacgcggtggcggcgtactgcggcacgcgcgcgcagctcgacctgctgggcgcg
cagttccgctccttcatcacgcgccccgactacctcaagcccttcctgcagcccggccgc
ctcgtcaaggtgaaaacagaaaaatacgaatacgattggggtattatcgtaaactttaga
cataaaacgggcaagggtaagaagccacaagacgagaatccgctgacagcggatacagtt
atcatagtggacattttgcttcacgtgaagaaaagcaaaccggaggacagcgacacgaac
atgccttgtccgccgggggagacaggagacgtagaagtagtgccggttctacacacactt
atataccagataagttctctccgcgtctactaccccaaggaccttcgacctccagacaat
aggaaatcggttctcaagacgataggcgaagtgaagaaacgctttccagaagggcctcca
ttgcttaatcctataaaagatatgaaaattgaagaccctgtgtttaaagaatgtgtggat
agaataaaaattttagaagaaagactgtactcacatcccttacataaggacaagaaccgt
ggagcattaaccgcagcctatgagaataaacaggagatatacgaagaactgatgtcagtt
aagtccgaactgactaaagcaaaaagtatattacaaatggatgaactaaaaaaaaggaaa
cgagtgctcaggagattaggatattgtacgctatccgatgttatagaattgaaaggcaga
atagcctgtgaattgagcagcgccgacgagctgctgctgacggagctgatcttcaacggc
gtgttcaactcgctgagcgcggcgcagagcgcggcgctggtgagctgcttcgtgtgcgac
gagtccgccgcgcaggccgccgccgccgccgacgagctgcgcgccgtgctgcgccagctg
caggaatacgcgcgtcgcatagccaaggtgtcgatcgaggctaagatggacctggacgag
gacgagtacgtgggcaagttcaaatgcacgctcatggacgtggtgctcgcgtgggctaac
ggagcctcctttctgcagatctgcaagatgaccgacgtcttcgaaggttctataatccgc
tgcatgcgtcgcttggaggaggtcctccgccagctgtgccaggccgccaagaacatcggc
aacaccgacctggagaacaagttcagcgacgccatcaagatgctcaaacgagacatcgtg
ttcgccgccagcttgtacatgtga
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