Nymphalis io (European peacock): 126781185
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Entry
126781185 CDS
T08495
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
niq
Nymphalis io (European peacock)
Pathway
niq03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
niq00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126781185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
niq03019
]
126781185
03041 Spliceosome [BR:
niq03041
]
126781185
Messenger RNA biogenesis [BR:
niq03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
126781185
Spliceosome [BR:
niq03041
]
Complex B
Other components
Prp19-related factors
126781185
Complex C
126781185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
TPR_12
NRDE-2
Mad3_BUB1_I
PPR
ARM_TT21_C
DHR-2_Lobe_A
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
126781185
NCBI-ProteinID:
XP_050361984
LinkDB
All DBs
Position
3:10616415..10619493
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AA seq
842 aa
AA seq
DB search
MPLLDGKEIDIFFTEEDLPYEEEILRNPFSVKHWLRYIEHKKAAPKNEVNMIYERALKEL
PGSFKLWYNYLKLRRSQIRGRCVTDPAYDDVNNCFERSLVFMHKMPRIWMDYCTFLTDQC
KITNTRKAFDSALRALPITQHHRIWPLYLKFLKKHYIPETAVRVFRRYLKLCPEDTEEYI
DYLISIEKLDEAAVKLAQLVNNENFQSKHGKSNHQLWNELCELISKNPDKIHSLNVDAII
RGGLRRYTDQLGHLWNSLADYYVRSGLFERARDIYEESIQTVTTVRDFTQVFDAYAQFEE
LSLSKKMEEVAKKTNPTEDDDIDLELRLARFEYLMERRLLLLNSVLLRQNPHNVAEWHKR
VKLYEGKPHEIIDTYTEAVQTVDPKLAVGKLYTLWVGFAKFYESNDQIDDARLIFEKATQ
VNYAKVEDLASVWCEWAEMEIKHENYEEALKLMQRATVLPSRKVAYHDDKETVQMRLYKS
LKVWSMYADLEESFGTYKSCKAVYDHIIDLKIATPQIIINYGLFLEEHNYFEEAFRAYEK
GIALFKWPNVYDIWNTYLTKFLKRYGGSKLERARDLFEQCLEHCPPEFAKSIFLLYAKLE
EEHGLARHAMSVYERAATAVLPEQMFEMFNIYIKKAAEIYGVPKTRQIYEKAIETLPDER
AREMCIRFSEMETKLGEIDRARAIYAHCSQMCDPRITAEFWNTWKEFEVRHGNEDTMREM
LRIKRSVQATYNTQVNMMSAQMLSSAAQAAGTVSDLAPGMKDGMRMLEAKAAEMAVQSKG
NILFVRGETQGLKENDKVINPDEIDIDEEESENSGDDDEEVAPVQKKDIPAAVFGGLLPE
KE
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atgccattgctcgatggaaaagaaatcgatatatttttcacagaagaagatttaccatat
gaagaagaaatattaaggaatcctttttcagtcaaacattggctgaggtatatagaacat
aaaaaagctgcacctaaaaatgaagttaatatgatttatgaaagagctcttaaagaacta
cctggctctttcaaattatggtacaattacttaaaattaagaagatctcaaataagaggt
cgctgtgtaactgatcctgcttatgatgatgttaataattgttttgaaaggtctttagtt
ttcatgcacaaaatgcctagaatatggatggattactgtacctttctaactgaccagtgc
aaaataactaatacaagaaaagcatttgacagtgctttaagggctttacctattactcaa
caccacaggatctggccactgtatcttaaatttttaaagaaacattacatccctgaaaca
gcagttagagtatttagaagataccttaagttatgtccagaagatacagaggaatatatt
gactacttaatttctatagaaaagttagatgaagcagctgttaaattagctcagcttgta
aataatgaaaattttcaatcaaagcatggaaagtccaatcatcaactctggaatgagtta
tgtgaactaatctcaaaaaatcctgataaaattcattcactgaatgttgacgctataatt
agaggtgggcttagacgctatacagaccaattgggccacctatggaattccttagcagac
tattatgtgagaagtggtttgtttgaacgagcaagagatatttatgaagaatctatacaa
actgttacaactgtaagagatttcacccaagtctttgatgcctatgctcaatttgaagaa
cttagtttaagtaagaaaatggaagaagttgctaagaaaacgaatcctactgaagatgat
gatattgatttagaactaagacttgcaaggtttgaatatttaatggagagacgattactt
cttctgaattctgtgctattgagacaaaatccacataatgttgctgagtggcataaaaga
gtaaagctttatgaaggaaaaccccatgaaataattgatacatatacagaagctgttcaa
acagttgaccccaaattagcagtaggaaaattatatactttatgggttggatttgcaaag
ttttatgaaagtaatgatcaaattgatgatgcaagattgatttttgaaaaagcaactcaa
gtaaattatgctaaagttgaagacctggcatctgtttggtgtgaatgggcagaaatggaa
atcaaacatgaaaactatgaagaagccttaaaattaatgcaaagagctactgttttacct
agtagaaaagttgcttatcatgatgataaagaaacagttcaaatgcgtctttataaatct
ttaaaagtgtggtctatgtatgctgatttagaggaaagttttggtacatataaatcctgt
aaagctgtttatgatcacattattgatttaaaaatagcaacacctcaaataattataaac
tatggtctttttttggaagaacataactatttcgaagaagcttttagagcatatgaaaaa
ggaatagctctttttaaatggccaaatgtgtatgatatttggaatacatatttgactaag
tttttaaaaagatatggaggatcaaaacttgaaagagcaagagatctatttgaacaatgc
cttgaacactgcccaccagagtttgccaaatcaatatttttattatatgctaagttagaa
gaagaacatggtttggctagacatgcaatgtctgtatatgaacgagctgccactgcagtt
cttccggagcaaatgtttgaaatgtttaacatttatattaaaaaagctgctgagatctat
ggtgttccaaaaacgcgacaaatatacgaaaaagccattgaaactcttcctgatgaaaga
gcaagagaaatgtgtatacgtttttcggaaatggaaacaaaacttggagagatagacagg
gctcgagctatttatgcacattgtagccaaatgtgtgatccccgtattacagctgaattc
tggaacacttggaaagaattcgaagtcagacatggaaatgaggatacaatgcgtgaaatg
ctcaggataaagagaagtgtacaagctacatataatactcaagtaaacatgatgtcagcc
cagatgttaagctcagctgcgcaagctgctggtacagtatctgatcttgctccaggtatg
aaagatggcatgagaatgctagaagcaaaggctgcagaaatggcagttcaaagcaaaggt
aatatactgtttgttagaggggaaactcaaggtcttaaagaaaatgataaggttattaat
cctgatgaaattgacattgatgaagaagaatctgaaaacagtggagatgatgatgaggag
gtggctcctgttcagaaaaaagacataccagctgctgtttttggaggtttacttccagaa
aaggaataa
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