KEGG   Candidatus Nitrosopumilus sediminis: NSED_00675
Entry
NSED_00675        CDS       T02303                                 
Name
(GenBank) RNA-binding protein
  KO
K07573  exosome complex component CSL4
Organism
nir  Candidatus Nitrosopumilus sediminis
Pathway
nir03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nir00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NSED_00675
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:nir03019]
    NSED_00675
Messenger RNA biogenesis [BR:nir03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     NSED_00675
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     NSED_00675
SSDB
Motif
Pfam: ECR1_N
Other DBs
NCBI-ProteinID: AFS81947
UniProt: K0BA68
LinkDB
Position
complement(118306..118857)
AA seq 183 aa
MSENAIFPGDKIASIEEYEAGNNAFDDGDMVRAATVGEKDIDKETRTANVKHPKLLSIPR
AGDIIIGTVAAVMSSMIAVSIDYINGKPTTSKVECICGTRNLRIRNVALVNDIVTLKIIS
HLNGTIHASISEPNLGVLFTKCRKCGGKVVPMRDAIKCTDCAWIDERKLSSNFGNSDFVN
LRG
NT seq 552 nt   +upstreamnt  +downstreamnt
atgtctgaaaatgcaatatttccaggtgataaaatagcatctattgaagaatacgaggca
ggaaataatgcatttgatgacggagatatggtgagagcagcaacagtcggagaaaaggac
attgacaaggaaacacgaactgccaacgtaaagcatccaaaacttctatcaatcccaaga
gcaggcgatatcataattggaacagttgccgctgtaatgtcatctatgattgcagtttca
attgattacattaatggaaaaccaacaacatcaaaagtggaatgtatttgtggaacacga
aatttaagaatcagaaatgttgcactagttaacgatattgttacattaaaaattatcagc
catctcaatggtactattcatgcatcaattagcgaaccaaatttaggagttttatttacc
aaatgtagaaaatgtggaggaaaggttgttccaatgcgtgatgcaataaaatgtacagac
tgtgcgtggattgatgagagaaaactttcttcaaattttggaaatagtgatttcgtaaat
ttaagagggtaa

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