Candidatus Nitrosopumilus sediminis: NSED_00675
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Entry
NSED_00675 CDS
T02303
Name
(GenBank) RNA-binding protein
KO
K07573
exosome complex component CSL4
Organism
nir
Candidatus Nitrosopumilus sediminis
Pathway
nir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NSED_00675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nir03019
]
NSED_00675
Messenger RNA biogenesis [BR:
nir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NSED_00675
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
NSED_00675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N
Motif
Other DBs
NCBI-ProteinID:
AFS81947
UniProt:
K0BA68
LinkDB
All DBs
Position
complement(118306..118857)
Genome browser
AA seq
183 aa
AA seq
DB search
MSENAIFPGDKIASIEEYEAGNNAFDDGDMVRAATVGEKDIDKETRTANVKHPKLLSIPR
AGDIIIGTVAAVMSSMIAVSIDYINGKPTTSKVECICGTRNLRIRNVALVNDIVTLKIIS
HLNGTIHASISEPNLGVLFTKCRKCGGKVVPMRDAIKCTDCAWIDERKLSSNFGNSDFVN
LRG
NT seq
552 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaatgcaatatttccaggtgataaaatagcatctattgaagaatacgaggca
ggaaataatgcatttgatgacggagatatggtgagagcagcaacagtcggagaaaaggac
attgacaaggaaacacgaactgccaacgtaaagcatccaaaacttctatcaatcccaaga
gcaggcgatatcataattggaacagttgccgctgtaatgtcatctatgattgcagtttca
attgattacattaatggaaaaccaacaacatcaaaagtggaatgtatttgtggaacacga
aatttaagaatcagaaatgttgcactagttaacgatattgttacattaaaaattatcagc
catctcaatggtactattcatgcatcaattagcgaaccaaatttaggagttttatttacc
aaatgtagaaaatgtggaggaaaggttgttccaatgcgtgatgcaataaaatgtacagac
tgtgcgtggattgatgagagaaaactttcttcaaattttggaaatagtgatttcgtaaat
ttaagagggtaa
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integrated database retrieval system
