Candidatus Nitrosopumilus sediminis: NSED_01125
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Entry
NSED_01125 CDS
T02303
Name
(GenBank) DEAD/DEAH box helicase
KO
K03726
ATP-dependent DNA helicase [EC:
5.6.2.4
]
Organism
nir
Candidatus Nitrosopumilus sediminis
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nir03400
]
NSED_01125
Enzymes [BR:
nir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NSED_01125
DNA repair and recombination proteins [BR:
nir03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Archaeal homologous recombinant proteins
NSED_01125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_dom4_arc
Helicase_C
ResIII
HHH_5
DEXQc_Suv3
HHH_2
DNA_pol_lambd_f
HTH_61
AAA_25
nSTAND3
Terminase_6N
Motif
Other DBs
NCBI-ProteinID:
AFS82037
UniProt:
K0BAB6
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All DBs
Position
190063..192189
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AA seq
708 aa
AA seq
DB search
MNIEKLKLPESAIEFLKSQGFEKLYPPQADSVKSGLLDGKSILVSAPTASGKTLIAMLAM
LSYLYKNKGKIIYLSPLRALAAEKFAEFKKLEKIALGNKIKVAISTGDFENIEKNLEKSN
VLILTNEKMDSIIRHGVEWVDDIGLVISDEVHLIGDESRGPTLEMILTQLKLLETKPQIV
GLSATITNSDEIADWLECKLVKNDWRPVPLSEGVCDAGEVTMNDGKTFEVERSLRGTPID
LGVQSVQQGGQSLVFAETRTRSKSLATKAADAISQILEKKEISELEKTSKKLLAENEHTE
LVKTLALLVKKGVAFHHAGLNQKCRETIEAEFRKGTIKLLSSTPTLAAGVNLPARRVVIS
NVNRYNAKVGANRPISILEYKQLCGRAGRPQYDDYGESIIVGNGNTDDLIEYYINGEPEP
IESKITDDKSLRTHILSVIVTHPGIKKEEILEFFLQTLGGLQSRKPTLKFAIDISLRFLS
SKFLIIKKGERYAATEFGKKTSMLYIDPLTATYFRDSIENVSQERKHTFGFLHLITNCKE
FFPKFALRQKDYETASLMIENNSSELLEPISEYDCSRSLLALQYWITESTELSLSDSLGI
ESGDMHRMTENANWLSYCLREISKHVERVDLLQELGDLRNRVVYGIREELLDLVRVKGIG
RVRARILFKNGIKNLDDLRKIPVNKLAEIDKIGSTIADNIKAELRKVR
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgaacatagagaaactaaaacttcctgaatctgcaattgaatttttaaaatcacaaggt
tttgaaaaattatatccgccacaggctgatagtgtaaaatctggattattagatggaaaa
agcattctagtttcagctcctactgcaagtggaaaaactttgatagcgatgcttgcaatg
ttgagttatctatataaaaacaaaggaaagataatttatctcagtccattgcgagcacta
gctgctgaaaaatttgcagaattcaaaaaattagaaaaaattgctttaggaaataaaata
aaggtagcaatatcaacaggtgattttgaaaatattgaaaaaaatctagagaaaagcaac
gtgttgattttaacaaatgaaaaaatggattctatcattcgacatggtgttgaatgggtt
gacgatataggattagtaatttctgatgaagtacatttgattggagatgaaagtagaggt
cctacacttgagatgattctgactcaactaaaactgttggaaacaaaaccacaaattgtt
ggtcttagtgcaacgataactaattccgatgaaattgcagattggctcgaatgcaaacta
gtaaaaaatgactggagacctgttccgttatcagaaggggtatgtgatgccggtgaagtt
acaatgaatgatggtaaaacctttgaagttgagcgtagtttgaggggaaccccaattgat
ctaggcgtacaatcagtacaacaaggaggtcaatcactggtttttgccgagactagaact
cgctcaaaatcccttgcaacaaaagcagctgatgcaatctcacaaattcttgaaaaaaaa
gaaatttcggaacttgaaaaaacatcaaaaaaacttctagctgaaaacgaacatactgaa
ttagtgaaaactttggctttacttgtaaaaaaaggagttgcgtttcaccatgcaggatta
aatcaaaagtgcagagaaacaatagaggcggaatttcgtaaaggaacaattaaactattg
tcatcaactcctacactagctgcaggtgtcaatcttcctgcaagaagagttgtcatttca
aatgtaaatagatacaatgcaaaagttggagcaaacagaccaatcagtattttagaatat
aaacagctttgtggaagagctggaagaccacaatatgatgattatggggaatcaattatt
gttggaaatggtaacactgatgatctgattgaatattacattaatggagaacctgaacca
attgaatcaaaaattactgatgacaaatctttgcgaactcatattttgagtgtgatagtc
acacatcctggaattaaaaaagaagagattctggaattctttttacaaacactaggagga
ttgcaatcaagaaaacctacattaaaatttgcaattgacatttcattacgtttcctttct
agcaaattcctgataattaaaaaaggtgaaagatatgctgcaactgaatttggaaaaaag
acatcaatgttgtacatcgatcctttaactgccacatactttagagattcaattgaaaat
gtttcccaagaaagaaaacatacttttggatttttacatctaatcacaaactgtaaagaa
tttttcccaaaatttgcccttagacaaaaagattatgagactgccagtttaatgattgag
aataattcatctgaattactagagcctatttcagaatatgactgttcacgcagtctattg
gctttacaatactggattactgaatccactgaattatcactatctgacagtcttggaatc
gaatctggagacatgcacagaatgactgaaaatgctaattggctatcttattgtttgaga
gaaatttctaagcacgtagagagggttgatttactccaagaattgggtgatttaagaaat
agagtggtttatggcataagggaggagttacttgatttggtgagagttaaggggattgga
agagtaagagctagaattctttttaaaaatgggatcaaaaacctggatgatttgaggaaa
attcctgtgaataaattggcagaaattgataaaattggttcaaccattgcggataacata
aaggctgagttacgaaaggttagataa
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