Candidatus Nitrosopumilus sediminis: NSED_01965
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Entry
NSED_01965 CDS
T02303
Name
(GenBank) pseudouridylate synthase subunit TruB
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
nir
Candidatus Nitrosopumilus sediminis
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nir03016
]
NSED_01965
Enzymes [BR:
nir01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
NSED_01965
Transfer RNA biogenesis [BR:
nir03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
NSED_01965
Prokaryotic type
NSED_01965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
PUA
DKCLD
Pus10_C
Motif
Other DBs
NCBI-ProteinID:
AFS82203
UniProt:
K0B7T1
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All DBs
Position
337856..338857
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AA seq
333 aa
AA seq
DB search
MTLKQLENLIEIDQDITDDAYGTYYDKRTIEQLLNYGIILLDKPPGPTSHETVAWTKRLL
KLPKIGHSGTLDPQVSGVLPLGLGEATKALGVLLYGPKEYHALGRVHSLPSKEKLQEVVD
MFRGEIFQKPPQRSAVLRQTRTRTIYEFEIIEQKERLLLTRILCEAGTYIRKLYYDIGEI
LGPGATMVELRRTRVDQFSERDGLVTLHELADAFALWEEKKDDSKLMKMIKPVELALSEL
KSVIIRDSAVDAMCHGAQLAIPGILKISPNLKKGDIVGVYTQKGEAVALAEATMSEEEIR
DATKGYAFETKRIIMAPNTYPKKWRTKPTPPKD
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgactctaaagcaactagaaaatctaattgaaattgatcaggacatcaccgatgatgca
tacggaacatattatgacaaaagaacaattgagcaattactaaattatggaattattctt
ttagacaaaccgccaggccctacaagtcatgaaacagtagcttggactaaacgtctactg
aaactcccaaaaattggtcacagtggtacactagatcctcaggtttctggagtcttgcct
ttgggattgggtgaggcaacaaaggcattaggtgttttactttatggtccaaaagaatat
catgcactaggacgtgttcactctcttccatcaaaagaaaaactgcaagaagttgtagat
atgttcagaggcgaaattttccaaaaacctcctcaacgttctgcagttctcagacaaact
agaaccagaacaatttacgagtttgaaattatagaacaaaaagaaagactgctcttaacg
agaatcctatgtgaggctggaacttatatcagaaaactatactatgacattggagaaata
ctagggcctggtgccacaatggttgagcttagaagaaccagagttgatcagttctccgaa
cgcgatggattagtaacactacacgaacttgcagatgcatttgcattgtgggaggagaaa
aaagatgatagcaaactaatgaagatgatcaaacctgttgagctagcactaagtgaatta
aagtctgtgataattcgcgattctgcagttgatgcaatgtgccatggtgcacaacttgca
attcctggaatcttgaaaatttctcctaatttgaagaaaggagatattgttggagtttat
acccaaaaaggagaggcagtcgcattagctgaggcaacaatgtctgaagaggaaattcgt
gatgcaacaaaaggttatgcatttgaaacaaagagaatcattatggctcctaacacatat
cctaaaaagtggaggacaaaacccactcctccaaaggattaa
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