Candidatus Nitrosopumilus sediminis: NSED_02250
Help
Entry
NSED_02250 CDS
T02303
Name
(GenBank) exosome complex RNA-binding protein Rrp42
KO
K12589
exosome complex component RRP42
Organism
nir
Candidatus Nitrosopumilus sediminis
Pathway
nir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NSED_02250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nir03019
]
NSED_02250
Messenger RNA biogenesis [BR:
nir03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
NSED_02250
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
NSED_02250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
AFS82260
UniProt:
K0BB86
LinkDB
All DBs
Position
379721..380539
Genome browser
AA seq
272 aa
AA seq
DB search
MTSTSVIDELKRTQILELLEQGKRVDGRALDEAREIKIETNAIPKANGSARVFLGDTEVI
CGVKIQPDRPFPDTGDKGLFICTAELLPLSHPTVETGPPQPPVIELARVVDRGIRESHMV
DVSQLVIEKDKSVIGVFADNVVVDYDGNLFDACSYAATAALLTTKTPKWNWTDDSPVLAE
GEDRPLPITTIPVSVTMGKIGNYIVVDPNGDEWESMDARVTITTDSDGNICALQKGGSDG
FTQDEINQCGEISVRIGAKIREKLKAAQKDSQ
NT seq
819 nt
NT seq
+upstream
nt +downstream
nt
ttgacatctacttctgttattgatgaattaaagagaacccaaattcttgagctactagaa
caaggaaaaagagttgatgggcgtgcacttgatgaagcacgtgaaattaaaattgagact
aatgcaattcctaaagcaaacggctcagcaagagttttccttggtgataccgaagtaata
tgtggagtcaaaattcaacctgatagacctttcccagatactggtgacaaaggacttttc
atttgtactgctgaacttttaccgttatcacatcctaccgttgaaactggccctccacaa
ccacctgtaattgaattagcaagagttgttgacaggggaatcagagaaagtcatatggta
gatgtttctcaattagtaattgaaaaagacaaatctgtaattggtgtatttgcagataat
gttgtagttgattatgatggaaatctatttgatgcatgctcttatgccgctaccgctgct
ctacttacaactaaaactcctaaatggaattggactgatgattctccagtattagctgaa
ggtgaagatagacctttaccaattactacaatccctgtgtctgtgactatgggtaaaatt
ggaaactatattgtcgttgatccaaatggtgatgaatgggaaagcatggatgcacgtgtt
acaattaccactgattctgatggaaatatttgcgctttacaaaaaggtggaagtgatggc
tttactcaggatgaaattaaccaatgcggtgaaatctctgttagaataggcgcaaaaata
agagaaaaattaaaagcagctcaaaaggacagtcaataa
DBGET
integrated database retrieval system
