Candidatus Nitrosopumilus sediminis: NSED_02330
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Entry
NSED_02330 CDS
T02303
Name
(GenBank) tRNA intron endonuclease
KO
K01170
tRNA-intron endonuclease, archaea type [EC:
4.6.1.16
]
Organism
nir
Candidatus Nitrosopumilus sediminis
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nir03016
]
NSED_02330
Enzymes [BR:
nir01000
]
4. Lyases
4.6 Phosphorus-oxygen lyases
4.6.1 Phosphorus-oxygen lyases (only sub-subclass identified to date)
4.6.1.16 tRNA-intron lyase
NSED_02330
Transfer RNA biogenesis [BR:
nir03016
]
Prokaryotic type
tRNA spricing factors
tRNA splicing endonucleases
NSED_02330
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
tRNA_int_endo
tRNA_int_endo_N
Motif
Other DBs
NCBI-ProteinID:
AFS82276
UniProt:
K0BD27
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All DBs
Position
393245..393808
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AA seq
187 aa
AA seq
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MEDAPLVKGELISDQTCISDKNMIHELGLKGFGEIENEKLFLKSFETLYLLYTKRLILKK
NKKQIDFDFFMNLCQIDDSEILTKFLIYRDLRNRGYVVKDGFGFGSDFRVYERGHYGEKG
AKFLIFGLNEGQQEKMGTLQKKVEEISQMGKEPIIAVIERRGEVIYYKINKMNFYENKSR
LEESFQL
NT seq
564 nt
NT seq
+upstream
nt +downstream
nt
atggaagatgccccattagtaaaaggagaattaatttcagatcaaacatgcatctctgat
aagaacatgatccatgaattaggcttgaagggatttggagaaattgaaaatgaaaaatta
ttcctcaaatcatttgaaactctttatctgttatatacaaaaagactgattttaaagaaa
aacaaaaagcaaattgattttgatttttttatgaacctatgccaaattgatgattctgaa
attctcaccaagtttttgatatatcgagatttacgaaatcgcgggtatgttgtaaaggac
ggatttgggtttggttctgattttagagtttatgagcgaggtcactatggtgaaaaagga
gcaaaatttctcatctttggtctcaatgaaggtcaacaagaaaaaatgggtactttacaa
aaaaaagttgaagagatttctcaaatgggaaaagaaccaatcattgcagtaatagagcga
agaggcgaagtgatttattataaaattaataaaatgaatttttacgaaaataaatctaga
ttagaagaatcgtttcaactttaa
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